View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18318_low_7 (Length: 614)
Name: NF18318_low_7
Description: NF18318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18318_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 19 - 599
Target Start/End: Original strand, 688106 - 688686
Alignment:
| Q |
19 |
aatagtgaggttccaacaatagaaacaatattcagaatttgattttattgtcgcaggttgaattggcaatttggccatgtatgtatacaaaaatatcaca |
118 |
Q |
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| T |
688106 |
aatagtgaggttccaacaatagaaacaatattcagaatttgattttattgtcgcaggttgaattggcaatttggccatgtatgtatacaaaaatatcaca |
688205 |
T |
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| Q |
119 |
agtggagtaagttgtggctttgatctttatgaaattaaatatcttgactttacctactaaagtagttgttgaggtaaaatttataacaccacctaaataa |
218 |
Q |
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| T |
688206 |
agtggagtaagttgtggctttgatctttatgaaattaaatatcttgactttacctactaaagtagttgttgaggtaaaatttataacaccacctaaataa |
688305 |
T |
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| Q |
219 |
tcaccgagtaaatccggaacttctgtaacatcttcataaacaatcaaaattgtgcttatgttatgggatttaagagctggaattgtgtcttcatgtaatg |
318 |
Q |
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| T |
688306 |
tcaccaagtaaatccggaacttctgtaacatctacataaacattcaaaattgtgcttatgttatgtgatttaagagctggaattgtgtcttcatgtaatg |
688405 |
T |
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| Q |
319 |
gagctgtagccaaaagattaccacggtaattaagataagcactgctgttttggtatgtaaagcttccatgattaggattatcaaccgtgaccaatatagc |
418 |
Q |
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| T |
688406 |
gagctgtagccaaaagattaccacggtaattaagataagcactgctgttttggtatgtaaagcttccatgattaggattatcaaccgtgaccaatatagc |
688505 |
T |
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| Q |
419 |
taatgataaatttagatccaaaattgggagaatatcaagatgaaaccttccaaacttaactgattgtaatgtaattgtggggtctttttgcttgaaatca |
518 |
Q |
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| T |
688506 |
taatgataaatttagatccaaaattgggagaatatcaagatgaaaccttccaaacttaactgattgtaatgtaattgtggggtccttttgcttgaaatca |
688605 |
T |
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| Q |
519 |
gtgaggaataagattaatagtatcactaatactacaattagaaaaatggttgtgacaccacaacagatttttagccctttg |
599 |
Q |
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| T |
688606 |
gtgaggaataagattaatagtatcactaatactacaattagaaaaatggttgtgacaccacaacagatttttagccctttg |
688686 |
T |
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