View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18319_high_1 (Length: 489)
Name: NF18319_high_1
Description: NF18319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18319_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 19 - 486
Target Start/End: Original strand, 8279074 - 8279552
Alignment:
| Q |
19 |
tttaatgttgaaagttgaaaatcattgaaactaactaagcatgctttattaatttataggtgaaaatccaaaagatgagatcaaacctagaagagaagtt |
118 |
Q |
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| T |
8279074 |
tttaatgttgaaagttgaaaatctttgaaactaactaagcatgctttattaatttataggtgaaaatccaaaagatgagatcaaacctagaagagaagtt |
8279173 |
T |
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| Q |
119 |
gatgaagaggatgtcagtggttcacaggaaagctgaggattggagagaaacagctagacaacaacacttagagcaaatggagaaatcaactcaacatgct |
218 |
Q |
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| T |
8279174 |
aatgaagaggatgtcagtggttcacaggaaagctgaggattggagagaaacagctagacaacaacacttagagcaaatggagaaatcaactcaacatgct |
8279273 |
T |
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| Q |
219 |
aaaaagattattcataggcataactcacaattttctaggcatagttcatgtggatgctttccttgcaataacaaccattaaacatgtgtttgttctgcgt |
318 |
Q |
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| T |
8279274 |
aaaaagattattcataggcataactcacaattttctaggcacagttcatgtggatgctttccttgcaataacaaccattaaacatgtgtttgttctgcat |
8279373 |
T |
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| Q |
319 |
cgataaaaaatgattttgaatgaattgcttttatggagttgatttttgttgaaattgagttagacgtaaagtgatttatatttgatccatttcgaaaaag |
418 |
Q |
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| T |
8279374 |
cgataaaaaatgattttgaatgaattgcttttatgaagttgatttttgttgaaattgagttagacgtaaagttatttatatttgatccatttcaaaaaag |
8279473 |
T |
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| Q |
419 |
tgatttttaaat-----------catataactgattttatgattagaattagttctaaagttggatgctataaacatac |
486 |
Q |
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| T |
8279474 |
tgatttttaaatattagtttttggatataattgattttatgattataattagttctaaggttggatgctataaacatac |
8279552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 402
Target Start/End: Complemental strand, 13344910 - 13344837
Alignment:
| Q |
329 |
tgattttgaatgaattgcttttatggagttgatttttgttgaaattgagttagacgtaaagtgatttatatttg |
402 |
Q |
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||||||||| ||||||| |||| | || |||||||| ||| ||| |||||| |||||||||||||||| |||| |
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| T |
13344910 |
tgattttgattgaattgattttgtagaattgattttggttaaaagtgagttgaacgtaaagtgatttatgtttg |
13344837 |
T |
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