View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1831_high_13 (Length: 434)
Name: NF1831_high_13
Description: NF1831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1831_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 386; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 5603829 - 5604250
Alignment:
| Q |
1 |
tgaatctagtaaattaacaatgttggaaggaacttagatgggaaaagttgtaaaaccataataaatgtgtgtaatatcctataatagactcgttctttag |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5603829 |
tgaatctagtaaat-aacaatgttggaaggaacttagatgagaaaagttctaaaaccataataaatgtgtgtaatatcctataatagactcgttctttag |
5603927 |
T |
|
| Q |
101 |
aaattgtgacaatgaattaatttgtgaatcacggtgctataagtataagcaaatacacaaacaacttactagtctgaaaattagtttcctgtgatttcag |
200 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5603928 |
aaattgtgaca--gaattaatttgtgaatgacggtgctataagtaaaagcaaatacacaaacaacttattagtctgaaaattagtttcctgtgatttcag |
5604025 |
T |
|
| Q |
201 |
aattcaaacatgctatattgagatcttatttggtcgattcattcaacagtttttctctcctcttcagttgttgctttcatcttctgtggaaccaaaccaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5604026 |
aattcaaacatgctatattgagatcttatttggtcgattcattcaacagtttttctctcctcttcagttgttgctttcatcttctgtggaaccaaaccaa |
5604125 |
T |
|
| Q |
301 |
gtggtgttcatgtggtgcaggagctcttcaagtgaatacctgctcataaacataattattttgcagtaaaatataatggaacagagcccgtaaactaaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5604126 |
gtggtgttcatgtggtgcaggagctcttcaagtgaatacctgctcataaacataattattttgcagtaaaatataatggaacagagcccgtaaactaaat |
5604225 |
T |
|
| Q |
401 |
ttattccccaagttatcagtataat |
425 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
5604226 |
ttattccccaagttatcagtataat |
5604250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 5631541 - 5631120
Alignment:
| Q |
1 |
tgaatctagtaaattaacaatgttggaaggaacttagatgggaaaagttgtaaaaccataataaatgtgtgtaatatcctataatagactcgttctttag |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5631541 |
tgaatctagtaaat-aacaatgttggaaggaacttagatgagaaaagttctaaaaccataataaatgtgtgtaatatcctataatagactcgttctttag |
5631443 |
T |
|
| Q |
101 |
aaattgtgacaatgaattaatttgtgaatcacggtgctataagtataagcaaatacacaaacaacttactagtctgaaaattagtttcctgtgatttcag |
200 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5631442 |
aaattgtgaca--gaattaatttgtgaatgacggtgctataagtaaaagcaaatacacaaacaacttattagtctgaaaattagtttcctgtgatttcag |
5631345 |
T |
|
| Q |
201 |
aattcaaacatgctatattgagatcttatttggtcgattcattcaacagtttttctctcctcttcagttgttgctttcatcttctgtggaaccaaaccaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5631344 |
aattcaaacatgctatattgagatcttatttggtcgattcattcaacagtttttctctcctcttcagttgttgctttcatcttctgtggaaccaaaccaa |
5631245 |
T |
|
| Q |
301 |
gtggtgttcatgtggtgcaggagctcttcaagtgaatacctgctcataaacataattattttgcagtaaaatataatggaacagagcccgtaaactaaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5631244 |
gtggtgttcatgtggtgcaggagctcttcaagtgaatacctgctcataaacataattattttgcagtaaaatataatggaacagagcccgtaaactaaat |
5631145 |
T |
|
| Q |
401 |
ttattccccaagttatcagtataat |
425 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
5631144 |
ttattccccaagttatcagtataat |
5631120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 80 - 232
Target Start/End: Complemental strand, 5649000 - 5648848
Alignment:
| Q |
80 |
tataatagactcgttctttagaaattgtgacaatgaattaatttgtgaatcacggtgctataagtataagcaaatacacaaacaacttactagtctgaaa |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||| | | |||| ||||||||| | ||||||||||||| ||||||| ||||||||||||||||||| | ||| |
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|
| T |
5649000 |
tataatagactcgttctttagaaattgtgaccaagcattagtttgtgaatgatggtgctataagtaaaagcaaacacacaaacaacttactagtttaaaa |
5648901 |
T |
|
| Q |
180 |
attagtttcctgtgatttcagaattcaaacatgctatattgagatcttatttg |
232 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
5648900 |
attagtttcatgtgatttcagaattcaaacatgctatattgaaatcatatttg |
5648848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 316 - 425
Target Start/End: Complemental strand, 13168430 - 13168321
Alignment:
| Q |
316 |
tgcaggagctcttcaagtgaatacctgctcataaacataattattttgcagtaaaatataatggaacagagcccgtaaactaaatttattccccaagtta |
415 |
Q |
| |
|
|||| |||||||||||| ||| | ||||||||||||| ||||||| |||||||| ||| ||| || ||||||| |||||||||| ||||||||||||||| |
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|
| T |
13168430 |
tgcatgagctcttcaagcgaacatctgctcataaacagaattattatgcagtaacataaaattgagcagagcctgtaaactaaacttattccccaagtta |
13168331 |
T |
|
| Q |
416 |
tcagtataat |
425 |
Q |
| |
|
|||||||||| |
|
|
| T |
13168330 |
tcagtataat |
13168321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 316 - 421
Target Start/End: Complemental strand, 5648718 - 5648613
Alignment:
| Q |
316 |
tgcaggagctcttcaagtgaatacctgctcataaacataattattttgcagtaaaatataatggaacagagcccgtaaactaaatttattccccaagtta |
415 |
Q |
| |
|
|||| |||||||||||| ||||||||| ||||||||| || ||||||||||||| ||| |||||||||||||| |||||| |||||| ||||||| ||| |
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|
| T |
5648718 |
tgcatgagctcttcaagagaatacctgttcataaacagaaatattttgcagtaacataaaatggaacagagcctctaaactgaatttagtccccaaatta |
5648619 |
T |
|
| Q |
416 |
tcagta |
421 |
Q |
| |
|
|||||| |
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|
| T |
5648618 |
tcagta |
5648613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 322 - 425
Target Start/End: Original strand, 6307144 - 6307247
Alignment:
| Q |
322 |
agctcttcaagtgaatacctgctcataaacataattattttgcagtaaaatataatggaacagagcccgtaaactaaatttattccccaagttatcagta |
421 |
Q |
| |
|
|||||||||||| || |||| ||||||||| ||||||||||||||| ||| |||||||||||| | |||||||||||||||||| |||||||| ||| |
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|
| T |
6307144 |
agctcttcaagtaaagacctactcataaaccaaattattttgcagtaccataaaatggaacagagtcaataaactaaatttattccctaagttatcggta |
6307243 |
T |
|
| Q |
422 |
taat |
425 |
Q |
| |
|
|||| |
|
|
| T |
6307244 |
taat |
6307247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 77 - 168
Target Start/End: Complemental strand, 13168661 - 13168570
Alignment:
| Q |
77 |
tcctataatagactcgttctttagaaattgtgacaatgaattaatttgtgaatcacggtgctataagtataagcaaatacacaaacaactta |
168 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| | |||||||||||||||| | ||||||| ||||| ||||||| | |||||||||||| |
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|
| T |
13168661 |
tcctataatagacttgttctttagaaattgtgagcaagaattaatttgtgaatgatggtgctagaagtaaaagcaaacatacaaacaactta |
13168570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 316
Target Start/End: Complemental strand, 5648802 - 5648736
Alignment:
| Q |
250 |
tttttctctcctcttcagttgttgct---ttcatcttctgtggaaccaaaccaagtggtgttcatgtggt |
316 |
Q |
| |
|
|||||||||||||||||| ||||||| ||| |||||||||||||||||| || ||||||||||||| |
|
|
| T |
5648802 |
tttttctctcctcttcagctgttgctttcttcttcttctgtggaaccaaacaaa---gtgttcatgtggt |
5648736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 5649102 - 5649074
Alignment:
| Q |
1 |
tgaatctagtaaattaacaatgttggaag |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
5649102 |
tgaatctagtaaattaacaatgttggaag |
5649074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 297
Target Start/End: Complemental strand, 13168523 - 13168464
Alignment:
| Q |
237 |
attcattcaacagtttttctctcctcttcagttgttgctttcatcttctgtggaaccaaac |
297 |
Q |
| |
|
|||||||| ||| |||||||||||||||||| ||||||| |||||||||||||||||| |
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|
| T |
13168523 |
attcattcgacattttttctctcctcttcag-aattgctttgttcttctgtggaaccaaac |
13168464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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