View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1831_high_15 (Length: 411)
Name: NF1831_high_15
Description: NF1831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1831_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 55 - 395
Target Start/End: Original strand, 30676222 - 30676564
Alignment:
| Q |
55 |
actcttaacttatgtatagtcgcatatacatctattgaccaagcacatcgcatattttggatctgaacagtaagactcacactcactatcagaagtgcaa |
154 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30676222 |
actcctaacttatgtatagtcgcatatacatctattgaccaagcacatcgcatattttggatctgaacagtaagactcacactcactatcagaagtgcag |
30676321 |
T |
|
| Q |
155 |
taactttcaaatcctgctatgtaaacaacacaaataaaggcatgttacgaaaaggaatgaaaagattaacaaccttttcaaaagaatgagaaaagagacg |
254 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
30676322 |
taactttcaaatcctgcgatgtaaacaacacaaataaaggcatgttacgaaaaggaatgaaaagattaacaactttttctaaagaatgagaaaagagacg |
30676421 |
T |
|
| Q |
255 |
taccaccattgaccatgacaacaaatagggatattaagagaatgataacactaacaaacttgataaattcagccatattttttccctc--tggttatgac |
352 |
Q |
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||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||| |
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| T |
30676422 |
taccaccatcgaccattacaacaaatagggaaattaagagaatgataacactaacaaatttgataaattcagccatattttttccctctttgcttatgac |
30676521 |
T |
|
| Q |
353 |
aaattaatagaaaattgtttgatcaatttataatatagaaaac |
395 |
Q |
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| T |
30676522 |
aaattaatagaattttttttgatcaatttataatatagaaaac |
30676564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 39 - 372
Target Start/End: Original strand, 30611025 - 30611362
Alignment:
| Q |
39 |
tatcactttcaacttaactcttaacttatgtatagtcgcatatacatctattgaccaagcacatcgcatattttggatctgaacagtaagactcacactc |
138 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
30611025 |
tatcacttccaacttaactcttaacttatgtatagtcgcatatacatttattgatcaagcacatcgcatatattggatcgaaacagtaagactcacactc |
30611124 |
T |
|
| Q |
139 |
actatcagaagtgcaataactttcaaatcctgctatgtaaacaacacaaataaaggcatgttacgaaaaggaatgaaaagattaa--caaccttttcaaa |
236 |
Q |
| |
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||||||| |||||| |||| | |||||||| || ||||||||||||| ||||||||||||| ||||| || ||||||||||| |||| |||||||| |
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| T |
30611125 |
actatcattagtgcagtaacgtgcaaatcctatgatataaacaacacaaacaaaggcatgttacaaaaagaaacgaaaagattaaaccaactttttcaaa |
30611224 |
T |
|
| Q |
237 |
agaatgagaaaagagacgtaccaccattgaccatgacaacaaatagggatattaagagaatgataacactaacaaacttgataaattcagccatattttt |
336 |
Q |
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|||||||||||||| |||||||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
30611225 |
agaatgagaaaagaaacgtaccaccgttgactacgacaaaaaatagggatattaagagaatgataacactaacaaacttgataaattgagccatatttgt |
30611324 |
T |
|
| Q |
337 |
tccctc--tggttatgacaaattaatagaaaattgttt |
372 |
Q |
| |
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| |||| || |||||| |||||| |||||||| |||| |
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| T |
30611325 |
ttcctctttgcttatgaaaaattactagaaaatagttt |
30611362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 87 - 388
Target Start/End: Original strand, 30673628 - 30673933
Alignment:
| Q |
87 |
tattgaccaagcacatcgcatattttggatctgaacagtaagactcacactcactatcagaagtgcaataactttcaaatcctgctatgtaaacaacaca |
186 |
Q |
| |
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|||||||| |||||||| ||||| ||||||| |||||||||| | |||||||||||| | | ||||| ||| ||||||||||||||||||||||||||| |
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| T |
30673628 |
tattgacccagcacatcccatatattggatcagaacagtaaggcccacactcactattataggtgcagcaacgttcaaatcctgctatgtaaacaacaca |
30673727 |
T |
|
| Q |
187 |
aataaaggcatgttacgaaaaggaatgaaaagattaa--caaccttttcaaaagaatgagaaaagagacgtaccaccattgaccatgacaacaaataggg |
284 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| ||||||| | |||||| |
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| T |
30673728 |
aataaaggcatgttacaaaaaggaatgaaaagattaaaccaactctttcaaaagaatgaaaaaagagacgtaccaccattgactatgacaaaacataggg |
30673827 |
T |
|
| Q |
285 |
atattaagagaatgataacactaacaaacttgataaattcagccatattttttcc-ctct-ggttatgacaaattaatagaaaattgtttgatcaattta |
382 |
Q |
| |
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| ||| ||| |||||||||||||||||| |||||||||||||||||||||||||| || | | |||| ||||| | ||||||||||||||||||||||| |
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| T |
30673828 |
aaattgagataatgataacactaacaaatttgataaattcagccatattttttcctctttagcatatgtcaaatgactagaaaattgtttgatcaattta |
30673927 |
T |
|
| Q |
383 |
taatat |
388 |
Q |
| |
|
|||||| |
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|
| T |
30673928 |
taatat |
30673933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 76 - 389
Target Start/End: Original strand, 29831340 - 29831657
Alignment:
| Q |
76 |
gcatatacatctattgaccaagcacatcgcatattttggatctgaacagtaagactcacactcactatcagaagtgcaataactttcaaatcctgctatg |
175 |
Q |
| |
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|||||||||| ||||| |||||||| || |||||||||||| | ||||||||||||||| |||||||| |||||| ||| |||||||| |||| ||| |
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| T |
29831340 |
gcatatacatttattgtccaagcacttcccatattttggattgggacagtaagactcacaatcactatctttagtgcagtaattttcaaattctgcgatg |
29831439 |
T |
|
| Q |
176 |
taaacaacacaaataaaggcatgttacgaaaaggaatgaaaagattaa--caaccttttcaaaagaatgagaaaagagacgtaccaccattgaccatgac |
273 |
Q |
| |
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||| |||||||||||||||||||||| |||||||| ||||||||||| |||| |||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
29831440 |
taatcaacacaaataaaggcatgttaaaaaaaggaacgaaaagattaaaccaactttttcaaaagaatgagaaaaattacgtaccaccattgactatgac |
29831539 |
T |
|
| Q |
274 |
aacaaatagggatattaagagaatgataacactaacaaacttgataaattcagccatattttttc--cctctggttatgacaaattaatagaaaattgtt |
371 |
Q |
| |
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|| ||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| | | || | |||||||| | |||||| || || |
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| T |
29831540 |
aaaaaatagggaaatcaagagaatgataacactaacaaagttgataaattcagccatattttttcctcttttgcatttgacaaataactagaaatttttt |
29831639 |
T |
|
| Q |
372 |
tgatcaatttataatata |
389 |
Q |
| |
|
|||||||||||||||||| |
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| T |
29831640 |
tgatcaatttataatata |
29831657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 75 - 275
Target Start/End: Original strand, 30664940 - 30665142
Alignment:
| Q |
75 |
cgcatatacatctattgaccaagcacatcgcatattttggatctgaacagtaagactcacactcactatcagaagtgcaataactttcaaatcctgctat |
174 |
Q |
| |
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||||| ||||| |||||||| |||||||| ||||| ||||||| |||||||||| | || ||||||||||| | ||||| |||| |||||||||||| || |
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| T |
30664940 |
cgcatctacatttattgacccagcacatcccatatattggatcagaacagtaaggcccagactcactatcataggtgcagtaacgttcaaatcctgcgat |
30665039 |
T |
|
| Q |
175 |
gtaaacaacacaaataaaggcatgttacgaaaaggaatgaaaagattaa--caaccttttcaaaagaatgagaaaagagacgtaccaccattgaccatga |
272 |
Q |
| |
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||||||||||||||||||||||||||| ||| |||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
30665040 |
ataaacaacacaaataaaggcatgttacaaaacggaatgaaaagattaaaccaactctttcaaaagaatgtgaaaagagacgtaccaccattgactatga |
30665139 |
T |
|
| Q |
273 |
caa |
275 |
Q |
| |
|
||| |
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|
| T |
30665140 |
caa |
30665142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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