View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1831_high_27 (Length: 327)
Name: NF1831_high_27
Description: NF1831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1831_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 17 - 313
Target Start/End: Complemental strand, 2251452 - 2251156
Alignment:
| Q |
17 |
ctaaattcgttacttgatcaacaattaatcacaccatggccaaaaacattatagcttcccctaatatcattgtaacatttttccttttatttttatgtac |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2251452 |
ctaaattcgttacttgatcaacaattaatcacaccatggccaaaaacattatagcttcccccaatatcattgtaacatttttccttttatttttatgtac |
2251353 |
T |
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| Q |
117 |
attttcatcctctacccgtacttccttcgactcatccgagattaataatgtcaatgtcgacgacattgaccaaaccaaccatgattcatcatttcctatg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2251352 |
attttcatcctctacccgtacttccttcgactcatccgagattaataatgtcaatgtcgacgacattgaccaaaccaaccatgattcatcatttcctatg |
2251253 |
T |
|
| Q |
217 |
tctgttaagaatcctcttgatcaaaactctattttcctccctagtgagaatctacccgaacctgattccaaacatgcaactctagtccaagatgatg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2251252 |
tctgttaagaatcctcttgatcaaaactctattttcctccctagtgagaatctacccgaacctgattccaaacatgcaactctagtccaatatgatg |
2251156 |
T |
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