View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1831_high_3 (Length: 740)
Name: NF1831_high_3
Description: NF1831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1831_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 10 - 544
Target Start/End: Complemental strand, 32219797 - 32219263
Alignment:
| Q |
10 |
attatactctaagataaacatcattcttgtgccaaaatatttctaactctcctttattattcttttgtgcaggatgagtcgcaagacatttacaagaggc |
109 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32219797 |
attaaactctaagataaacgtcattcttgtgccaaaatatttctaactctcctttattattcttttgtgcaggatgagtcacaagacatttacaagaggc |
32219698 |
T |
|
| Q |
110 |
aacaacttagagaacttgcaatgctgaattcaagttttagagaagagagccctcaactgagtggtagtctctctccattcacctccaatgaaatgataaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32219697 |
aacaacttagagaacttgcaatgctgaattcaagttttagagaagagagccctcaactgagtggtagtctctctccattcacctccaatgaaatgataaa |
32219598 |
T |
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| Q |
210 |
aagagccaaaactgaccaatagtctttctctacattaagaaattgttgcatttgaagttacttcatgtatgtaatgtaaatgctgtgtagctgcaatgag |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32219597 |
aagagccaaaactgaccaatagtctttctctacattaagaaattgttgcatttgaagttacttcatgtatgtaatgtaaatgctgtgtagctgcaatgag |
32219498 |
T |
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| Q |
310 |
aaaacattgaagatatgatgccaatttggagaacacaatgatgaggagaatggagaaggggttgatagtttatatgctgcatatatgtctattgccacat |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32219497 |
aaaacattgaagatatgatgccaatttggagaacacaatgatgaggagaatggagaaggggttgatagtttatatgctgcatatatgtctattgtcacat |
32219398 |
T |
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| Q |
410 |
tcaactgcactagaagaattgtataattaacacagttattacttttattatattttgacaggtttgttgatggtgtgtgtatttctttaatgtgtgtaaa |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32219397 |
tcaactgcactagaagaattgtataattaacacagttattacttttattatattttgacaggtttgttgatggtgtgtgtatttctttaatgtgtgtaaa |
32219298 |
T |
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| Q |
510 |
tatcagtttcacacaacatttgctttcaagttgaa |
544 |
Q |
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| T |
32219297 |
tatcagtttcacacaacatttgctttcaagttgaa |
32219263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 9e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 73 - 230
Target Start/End: Complemental strand, 28304122 - 28303968
Alignment:
| Q |
73 |
tttgtgcaggatgagtcgcaagacatttacaagaggcaacaacttagagaacttgcaatgctgaattcaagttttagagaagagagccctcaactgagtg |
172 |
Q |
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|||||| |||||||||| || ||| ||||||||||||||||||| ||||||||||| ||||| ||||| | || ||||||||||||||||||||||||| |
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| T |
28304122 |
tttgtgtaggatgagtcacaggacctttacaagaggcaacaactaagagaacttgctatgctcaattccaacttcagagaagagagccctcaactgagtg |
28304023 |
T |
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| Q |
173 |
gtagtctctctccattcacctccaatgaaatgataaaaagagccaaaactgaccaata |
230 |
Q |
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| T |
28304022 |
gcagtgtctctccattcacttccaatgaa---ataaaaaggcccaaaactgagcaata |
28303968 |
T |
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