View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1831_high_4 (Length: 685)
Name: NF1831_high_4
Description: NF1831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1831_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 643; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 9 - 667
Target Start/End: Original strand, 5374315 - 5374973
Alignment:
| Q |
9 |
agcagagattctatacacatacaaacacatagctcatggatactccacaagactaactaaccaagaagccgaaacactttcaaaacagcccggaattctc |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5374315 |
agcagagattctatacacatacaaacacatagctcatggatactccacaagactaactaaccaagaagccgaaacactttcaaaacagcccggaattctc |
5374414 |
T |
|
| Q |
109 |
gatgttatacctgaactcagataccaacttcacacaacaagaacaccacagttccttggtttgccaaaaacaaacactcttttacctcactctagacaac |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5374415 |
gatgttatacctgaactcagataccaacttcacacaacaagaacaccacagttccttggtttgccaaaaacaaacactcttttacctcactctagacaac |
5374514 |
T |
|
| Q |
209 |
aaagtcaagtaatcattggtattcttgacactggtatatggccagagctaaaaagcttagatgacacaggactaggtccaataccaagtaattggaaagg |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5374515 |
aaagtcaagtaatcattggtattcttgacactggtatatggccagagctaaaaagcttagatgacacaggactaggtccaataccaagtaattggaaagg |
5374614 |
T |
|
| Q |
309 |
tgtatgtgaaactggtaacaacatgaattcgtcacactgcaacaaaaaactcataggtgcaaggtttttcttaaaagggtatgaagcagcacttggtcca |
408 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5374615 |
tgtatgtgaaactggtaacaacatgaattcatcacactgcaacaaaaaactcataggtgcaaggtttttcttaaaagggtatgaagcagcacttggtcca |
5374714 |
T |
|
| Q |
409 |
atagatgaaacaacagaatcaaaatcagctagagatgatgatggacatggaagtcacacattaacaacagcagcaggttctgttgtagcagaagctagct |
508 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5374715 |
atagatgaaacaacagaatcaaaatcagctagagatgatgatggacatggaagtcacacattaacaacagcagcaggttctgttgtagcagaagctagct |
5374814 |
T |
|
| Q |
509 |
tatttggtttagcttctggtacagcaagaggcatggctactgaagcccgtgtcgcggcttacaaggtgtgctggcttagtggttgtttcacttcagacat |
608 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5374815 |
tatttggtttagcttctggtacagcaagaggcatggctactgaagcgcgtgtcgcagcttacaaggtgtgctggcttagtggttgtttcacttcagacat |
5374914 |
T |
|
| Q |
609 |
agctgctggaatggataaagctatagaagatggtgttaacatcttatctatgtcgattg |
667 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5374915 |
agctgctggaatggataaagctatagaagatggtgttaacatcttatctatgtcaattg |
5374973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 1e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 28 - 667
Target Start/End: Complemental strand, 47368240 - 47367601
Alignment:
| Q |
28 |
tacaaacacatagctcatggatactccacaagactaactaaccaagaagccgaaacactttcaaaacagcccggaattctcgatgttatacctgaactca |
127 |
Q |
| |
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|||||||| |||||||||| | ||||||||| ||||||| |||||||| || ||| |||| || || ||||||||| ||||| ||||| ||| |
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| T |
47368240 |
tacaaacatgtagctcatggcttctccacaaggctaactactcaagaagcagacttactcacaaagcaaccgggaattctctcggttatccctgatgtca |
47368141 |
T |
|
| Q |
128 |
gataccaacttcacacaacaagaacaccacagttccttggtttgccaaaaacaaacactcttttacctcactctagacaacaaagtcaagtaatcattgg |
227 |
Q |
| |
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||||| | ||||||||||| |||||||| ||||||| || ||| ||||||| |||||||||||| |||| || |||||||| | || || |||| |
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| T |
47368140 |
gatacgagcttcacacaactcgaacaccagagttcctcggattggagaaaacaatcactcttttaccgtcctctggaaaacaaagtgaggtgattgttgg |
47368041 |
T |
|
| Q |
228 |
tattcttgacactggtatatggccagagctaaaaagcttagatgacacaggactaggtccaataccaagtaattggaaaggtgtatgtgaaactggtaac |
327 |
Q |
| |
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| ||||||| ||| ||||||| || ||||||||||| |||||||| ||||| || ||| |||| | | |||||||| | |||||| || ||||| |
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| T |
47368040 |
agtaattgacacaggtgtatggcctgaactaaaaagcttcgatgacactggacttggaccagtacccaaaagctggaaaggggaatgtgagacaggtaaa |
47367941 |
T |
|
| Q |
328 |
aacatgaattcgtcacactgcaacaaaaaactcataggtgcaaggtttttcttaaaagggtatgaagcagcacttggtccaatagatgaaacaacagaat |
427 |
Q |
| |
|
| | | || || ||| |||| ||||| ||||| | |||||||||||||| ||||| || || ||||| |||| || || ||||||| || |||| |
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| T |
47367940 |
accttcaactcatcaaactgtaacaagaaacttgttggtgcaaggttttttgctaaaggctacgaggcagcttttggacctattgatgaaaacacggaat |
47367841 |
T |
|
| Q |
428 |
caaaatcagctagagatgatgatggacatggaagtcacacattaacaacagcagcaggttctgttgtagcagaagctagcttatttggtttagcttctgg |
527 |
Q |
| |
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|||| ||| | || |||||||| || |||||||||||||| | ||| |||||||||||||||| || |||| ||| ||| | || ||||| |||||||| |
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| T |
47367840 |
caaagtcaccaagggatgatgacgggcatggaagtcacacctcaactacagcagcaggttctgcagttgcaggagcaagcctcttcggttttgcttctgg |
47367741 |
T |
|
| Q |
528 |
tacagcaagaggcatggctactgaagcccgtgtcgcggcttacaaggtgtgctggcttagtggttgtttcacttcagacatagctgctggaatggataaa |
627 |
Q |
| |
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||||||| |||||||||||| |||| || || || |||||||| ||||| |||||| ||||||| || || |||||||||||||||| || || || |
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| T |
47367740 |
gacagcaaaaggcatggctacacaagctcgagtggccgcttacaaagtgtgttggcttggtggttgctttacatcagacatagctgctgcgattgacaag |
47367641 |
T |
|
| Q |
628 |
gctatagaagatggtgttaacatcttatctatgtcgattg |
667 |
Q |
| |
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|| || ||||| ||||||||| || | |||||||| |||| |
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|
| T |
47367640 |
gccatcgaagacggtgttaacgtcctctctatgtctattg |
47367601 |
T |
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