View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1831_high_43 (Length: 237)
Name: NF1831_high_43
Description: NF1831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1831_high_43 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 45181322 - 45181102
Alignment:
| Q |
1 |
agttagaataatgctgaatttctattgcttctnnnnnnntatttcaatattatgttttcaagatacaacttactgtttattgtaataaataaattcaaat |
100 |
Q |
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| T |
45181322 |
agttagaataatgctgaatttctgttgcttctaaaaaaatatttcaatattatgttttcaagatacaacttactgtttattgtaataaataaatccaaat |
45181223 |
T |
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| Q |
101 |
aaagcttgattttactacccctcccttgattttacagatttcaaatgagaaagctagaaattttcttagtaaaatgccaaaaaagcaacccgttccattc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45181222 |
gaagcttgattttactacccctcccttgattttacagatttcaaatgagaaagctagaaattttcttagtaaaatgtgaaaaaagcaacccgttccattc |
45181123 |
T |
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| Q |
201 |
tccaagaaatttccaaatata |
221 |
Q |
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||||||||||||||||||||| |
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| T |
45181122 |
tccaagaaatttccaaatata |
45181102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 45174246 - 45174157
Alignment:
| Q |
132 |
ttacagatttcaaatgagaaagctagaaattttcttagtaaaatgccaaaaaagcaacccgttccattctccaagaaatttccaaatata |
221 |
Q |
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||||||||| ||||||||||||||||| | ||||| | |||| |||||| ||||| |||||||||||| ||||||||||||||||| |
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| T |
45174246 |
ttacagattcgaaatgagaaagctagaaggtatcttaacagcatgcgaaaaaaacaacctgttccattctcccagaaatttccaaatata |
45174157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 29961036 - 29960947
Alignment:
| Q |
129 |
attttacagatttcaaatgagaaagctagaaattttcttagtaaaatgccaaaaaagcaacccgttccattctccaagaaatttccaaat |
218 |
Q |
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|||||||||||| ||| ||||||||||||| | ||||||| |||| |||||||||||| ||||||||| |||| |||||||||||| |
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| T |
29961036 |
attttacagattcgaaacgagaaagctagaaggtaccttagtagcatgcgaaaaaagcaaccagttccattcaccaaaaaatttccaaat |
29960947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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