View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1831_high_46 (Length: 228)
Name: NF1831_high_46
Description: NF1831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1831_high_46 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 1058374 - 1058168
Alignment:
| Q |
1 |
tagcatttcttgcagcaagtctgaagtcattgacaaggtttggaatttcatctatccttagccgtctgggcggtgtgaattctgcgacatcaataccatt |
100 |
Q |
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| T |
1058374 |
tagcatttcttgcagcaagtctgaagtcattgacaaggtttggaatttcatctatccttagccgtctgggcggtgtgaattctgcgacatcaataccatt |
1058275 |
T |
|
| Q |
101 |
acttcgaagttgtggtgtgagtggcttgtctgtaggagatattggtgcctgtccattcggctgaaaaactatagttggggaaaagaacagcagatagatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1058274 |
acttcgaagttgtggtgtgagtggcttgtctgtaggagatattggtgcctgtccattcggctgaaaaactatagttggggaaaagaa---cagatagatg |
1058178 |
T |
|
| Q |
201 |
caggtcaagc |
210 |
Q |
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|||||||||| |
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| T |
1058177 |
caggtcaagc |
1058168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 1065438 - 1065248
Alignment:
| Q |
1 |
tagcatttcttgcagcaagtctgaagtcattgacaaggtttggaatttcatctatccttagccgtctgggcggtgtgaattctgcgacatcaataccatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||| ||||||||||||| ||| | || || |||||| |
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| T |
1065438 |
tagcatttcttgcagcaagtctgaagtcattgacaatgttaggaatttcatctgtccttagccgtctaggcggtgtgaattttgcaatattaaaaccatt |
1065339 |
T |
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| Q |
101 |
acttcgaagttgtggtgtgagtggcttgtctgtaggagatattggtgcctgtccattcggctgaaaaactatagtt-ggggaaaagaacag |
190 |
Q |
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| T |
1065338 |
acttcgaatttgtggtgtgagtgacttgtctgtagatgatattggtgcctgtccatttggctgaaaaactgtagttgggggaaaagaacag |
1065248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 1071177 - 1071008
Alignment:
| Q |
1 |
tagcatttcttgcagcaagtctgaagtcattgacaaggtttggaatttcatctatccttagccgtctgggcggtgtgaattctgcgacatcaataccatt |
100 |
Q |
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|
|||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||| || || |||||||||| ||| |||||||||||||| |
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| T |
1071177 |
tagcatttcttgcagcgagtctgaagtcattgacaatgtttggaatttcatctgtccttagccgccttggtggtgtgaattttgcaacatcaataccatt |
1071078 |
T |
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| Q |
101 |
acttcgaagttgtggtgtgagtggcttgtctgtaggagatattggtgcctgtccattcggctgaaaaact |
170 |
Q |
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|||||||| ||||||| | |||||||||||||||| |||||||||||| || ||||| |||||| ||||| |
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| T |
1071077 |
acttcgaatttgtggttttagtggcttgtctgtagaagatattggtgcttgcccatttggctgataaact |
1071008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 1046378 - 1046209
Alignment:
| Q |
1 |
tagcatttcttgcagcaagtctgaagtcattgacaaggtttggaatttcatctatccttagccgtctgggcggtgtgaattctgcgacatcaataccatt |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| || |||||||| ||| ||||||| || || |||||||||| || | ||||||||||| |
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| T |
1046378 |
tagcatttcttgcagcaagtctaaagtcattgacaatattaggaatttcttctgatcttagcctccttggtggtgtgaattgtgatatttcaataccatt |
1046279 |
T |
|
| Q |
101 |
acttcgaagttgtggtgtgagtggcttgtctgtaggagatattggtgcctgtccattcggctgaaaaact |
170 |
Q |
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| || || | ||||||||||| | |||||||||| |||||||||||| |||||||| || ||| ||||| |
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| T |
1046278 |
gcctccaattcgtggtgtgagtagtttgtctgtagaagatattggtgcttgtccatttggttgataaact |
1046209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 1033440 - 1033360
Alignment:
| Q |
1 |
tagcatttcttgcagcaagtctgaagtcattgacaaggtttggaatttcatctatccttagccgtctgggcggtgtgaatt |
81 |
Q |
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|||||||||||||||| |||||||||||||| |||| || |||||||||||| ||||||||| ||| || |||| ||||| |
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| T |
1033440 |
tagcatttcttgcagcgagtctgaagtcatttacaatattaggaatttcatctgtccttagccttctcggtggtgagaatt |
1033360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 1043832 - 1043766
Alignment:
| Q |
1 |
tagcatttcttgcagcaagtctgaagtcattgacaaggtttggaatttcatctatccttagccgtct |
67 |
Q |
| |
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||||||||||||||||||||||||| |||||||||| | |||||||||||| | ||||||||||| |
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| T |
1043832 |
tagcatttcttgcagcaagtctgaaatcattgacaatatgaggaatttcatctgtgcttagccgtct |
1043766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 1053038 - 1052869
Alignment:
| Q |
1 |
tagcatttcttgcagcaagtctgaagtcattgacaaggtttggaatttcatctatccttagccgtctgggcggtgtgaattctgcgacatcaataccatt |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| || |||||||| ||| | ||||||| || || ||||||||| || | | || ||||| |
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| T |
1053038 |
tagcatttcttgcagcaagtctaaagtcattgacaatattaggaatttcttctgttcttagcctcctcggttgtgtgaattgtggcatttgaaaaccatc |
1052939 |
T |
|
| Q |
101 |
acttcgaagttgtggtgtgagtggcttgtctgtaggagatattggtgcctgtccattcggctgaaaaact |
170 |
Q |
| |
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|| || || ||||||||||||| | |||| ||| | |||||||||||| || ||||| || ||| ||||| |
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| T |
1052938 |
acctccaatttgtggtgtgagtagtttgtttgttgaagatattggtgcttgcccatttggttgacaaact |
1052869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 1641093 - 1641249
Alignment:
| Q |
1 |
tagcatttcttgcagcaagtctgaagtcattgacaaggtttggaatttcatctatccttagccgtctgggcggtgtgaattctgcgacatcaataccatt |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| | ||||||||| ||||||| || || || |||||||| | || | |||||| ||||| |
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| T |
1641093 |
tagcattccttgcagcaagtctgaagtcattgacgatacgaggaatttcacaggtccttaggcgccttggtggtgtgaacttagctatatcaatgccatt |
1641192 |
T |
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| Q |
101 |
acttcgaagttgtggtgtgagtggcttgtctgtaggagatattggtgcctgtccatt |
157 |
Q |
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|||||| ||||||| |||||| | ||| |||| ||||||||||||||| ||||| |
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| T |
1641193 |
gcttcgagtttgtggtttgagtgacatgttagtagaagatattggtgcctgcccatt |
1641249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 1049999 - 1049945
Alignment:
| Q |
116 |
tgtgagtggcttgtctgtaggagatattggtgcctgtccattcggctgaaaaact |
170 |
Q |
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|||||||| ||||| ||||| |||||| ||||| ||||||||||||||| ||||| |
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| T |
1049999 |
tgtgagtgacttgtttgtagaagatatcggtgcttgtccattcggctgataaact |
1049945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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