View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1831_high_6 (Length: 615)
Name: NF1831_high_6
Description: NF1831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1831_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 486; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 17 - 555
Target Start/End: Original strand, 33685273 - 33685811
Alignment:
| Q |
17 |
aaaaccaattcaaatcacaacaaaaatcaaagaaatagaaatagaaggttttactctaacgatagcacaacacgaacaccgtgaaattcgatttcaaaag |
116 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33685273 |
aaaaccgattcaaatcacaacaaaaatcaaagaaataaaaatagaaggttttactctaacgacagcacaacacgaacaccgtgaaattcgatttcaaaag |
33685372 |
T |
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| Q |
117 |
ccggcgaagacgaggatgagaatcgaacaacaagacgttcaacagtgaaatccttgacgaacaataacggaggagagtggaatagtttgttgagaacagc |
216 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33685373 |
ccggtgaagaccaggatgagaatcgaacaacaagacgttcaacagtgaaatccttgacgaacaataacggaggagagtggaatagtttgttgagaacagc |
33685472 |
T |
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| Q |
217 |
gacatcgaagcggagattggtgacaacggcgagagagtggaagaaccctaattcgagattgagttgtggttcttcgaaaagccatggttgaagtcgagag |
316 |
Q |
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| T |
33685473 |
gacatcgaagcggagattggtgacaacggcgagagagtggaagaaccctaattcgagattgagttgtggttcttcgaaaagccatggttgaagtagagag |
33685572 |
T |
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| Q |
317 |
agtagtttccgtcggaaaatgctattgaagagcattgtagtgtcatggaatagggtttgcgatggagaaggtaaaggttggtttnnnnnnntggagtaac |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33685573 |
agtagtttccgtcggaaaatgctattgaagagcattgtagtgtcatggaatagggtttgcgatggagaaggtaaaggttggtttaaaaaaatggagtaac |
33685672 |
T |
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| Q |
417 |
tgactttatagtttggcgctgtgtgtgaatcggcgggaaagggtaaggtggtccacgtggctaggtgtttctatccaactgaaatgagccgaacgcgtgg |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33685673 |
tgactttatagtttggcgctgtgtgtgaatcggcgggaaagggtaaggtggtccacgtggctaggtgtttctatccaactgaaatgagccgaacgcgtgg |
33685772 |
T |
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| Q |
517 |
tagtgctaggccctagtttgggtttagttatttgaaaag |
555 |
Q |
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| T |
33685773 |
tagtgctaggccctagtttgggttcagttattcgaaaag |
33685811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 543 - 604
Target Start/End: Original strand, 33685825 - 33685886
Alignment:
| Q |
543 |
gttatttgaaaagccatggttcatactatatccacccaattcgaataacatatttgtttcat |
604 |
Q |
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| T |
33685825 |
gttattcgaaaagccatggttcctactatatccacccaatttgaataacatatttgtttcat |
33685886 |
T |
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