View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1831_high_8 (Length: 519)
Name: NF1831_high_8
Description: NF1831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1831_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 19 - 512
Target Start/End: Complemental strand, 43357540 - 43357051
Alignment:
| Q |
19 |
tagtaaaacagcagtgtcatggggccataataacaaacacttcaaaagaaggatgcgaccttactcaaatttccaaaaccagggtccaattgaattatta |
118 |
Q |
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| T |
43357540 |
tagtaaaacagcagtgtcatggggccataataaca----cttcaaaagaaggatgcgaccttactcaaatttccaaaaccagggtccaattgaattatta |
43357445 |
T |
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| Q |
119 |
tcataattacctcataacttttgctttctacgttttcttcgttttataacggtcctcattatgacatttcaggaccagtactgcactcaatcctcgtata |
218 |
Q |
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| T |
43357444 |
tcataattacctcataacttttgctttctacgttttcttcgttttataacggtcctcattatgacatttcaggaccagtactgcactcaatcctcgtata |
43357345 |
T |
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| Q |
219 |
tataaacacctttgtgtaatgttcctcctcattcaacatcaacaatggatgtcagagaaaactcaaaggaactgcagcaactgcaaacctttgctaaaca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43357344 |
tataaacacctttgtgtaatgttcctcctcattcaacatcaacaatggatgtcagagaaaactcaaaggaactgcagcaactgcaaacctttgctaaaca |
43357245 |
T |
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| Q |
319 |
agaacaatgcaacatctaccccatgaatttcaatgtgctagagaatacaaaaggcaacactaacagatgtaattctgcattctttgtaccaggtgaagga |
418 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43357244 |
agaacaatacaacatctaccccatgaatttcaatgtgctagagaatacaaaaggcaacactaacagatgtaattctgtattctttgtaccaggtgaagga |
43357145 |
T |
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| Q |
419 |
tattctgatgtccctactcatgaggaacattcttttgagtactactcagactccgactcgtcaagcgaggtagatggtgatgcatctgatgatg |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43357144 |
tattctgatgtccctactcatgaggaacattcttttgagaactactcagactccgactcgtcaagcgaggtagatggtgatgcatctgatgatg |
43357051 |
T |
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