View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1831_low_11 (Length: 514)
Name: NF1831_low_11
Description: NF1831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1831_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 14 - 435
Target Start/End: Complemental strand, 35703596 - 35703175
Alignment:
| Q |
14 |
gaataactgaaatgaaattcttcaatgctaaaatgacataacttagatgaagaggactcaaacacaagtttttcatgcagataaataaataaattattca |
113 |
Q |
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| T |
35703596 |
gaataactgaaatgaaattcttcaatgctaaaatgacataacttagatgaaaaggactcgaacacaagtttttcatgcagataaataaataaattattca |
35703497 |
T |
|
| Q |
114 |
catgtgcaaaaagcttaggaaggaaaaatctaggaatcaaaattaaccacacccacactggtaaaaaattctgcactaaactcaccataaactgtgttta |
213 |
Q |
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| T |
35703496 |
catgtgtaaaaagcttaggaaggaaaaatctaggaatcaaaattaagcacacccacactgctaaaaaattctgcactaaactcaccataaactgtgttta |
35703397 |
T |
|
| Q |
214 |
tggatgcaggagaaggtgttgacatgaagttaaggccaatgtagaataccaacattaatacaatggtcaccatcagataagttggtaccgccaaagccca |
313 |
Q |
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| T |
35703396 |
tggatgcaggagaaggtgttgacatgaagttaaggccaatgtagaataccaacattaatacaatggtcaccatcagataagttggtaccgccaaagccca |
35703297 |
T |
|
| Q |
314 |
gtatctgaaaagcataagtagttttcaatgcacaagtagttaaatcgctaaatggaagagctcactacacctgcttcatacaccttagttgagtttacat |
413 |
Q |
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| T |
35703296 |
gtatctgaaaagcataagtagttttcaatgcacaagtagttaaatcgctaaatggaagagctcactacacctgcttcatacaccttagttgagtttacat |
35703197 |
T |
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| Q |
414 |
ttacaaaattaaattaaattaa |
435 |
Q |
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| T |
35703196 |
ttacaaaattaaattaaattaa |
35703175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 140 - 337
Target Start/End: Complemental strand, 7957199 - 7957002
Alignment:
| Q |
140 |
aatctaggaatcaaaattaaccacacccacactggtaaaaaattctgcactaaactcaccataaactgtgtttatggatgcaggagaaggtgttgacatg |
239 |
Q |
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||||||| |||||||||||||||||||| || || ||||| ||| || | ||||||||||| |||||| ||||| |||||||||||| |||||||||||| |
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| T |
7957199 |
aatctagcaatcaaaattaaccacacccgcattgctaaaatattatgtattaaactcaccaaaaactgcgtttaaggatgcaggagatggtgttgacatg |
7957100 |
T |
|
| Q |
240 |
aagttaaggccaatgtagaataccaacattaatacaatggtcaccatcagataagttggtaccgccaaagcccagtatctgaaaagcataagtagttt |
337 |
Q |
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| T |
7957099 |
aagttaaggccaatgtagaatgccaacattaatacaatggtcaccatcacataagttggtactgccaaagcccagtatctgaaaagcataagtagttt |
7957002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 493
Target Start/End: Complemental strand, 35703142 - 35703101
Alignment:
| Q |
452 |
ttcttgtttttgtgcgaccaaacaattacatacagcagaaga |
493 |
Q |
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| T |
35703142 |
ttcttatttttgtgcaaccaaacaattacatagagcagaaga |
35703101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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