View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1831_low_12 (Length: 477)

Name: NF1831_low_12
Description: NF1831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1831_low_12
NF1831_low_12
[»] chr5 (18 HSPs)
chr5 (170-446)||(32096721-32096997)
chr5 (352-466)||(28531425-28531538)
chr5 (352-466)||(12692224-12692337)
chr5 (352-455)||(19066050-19066152)
chr5 (360-454)||(24054450-24054545)
chr5 (391-466)||(30384358-30384434)
chr5 (392-466)||(7389531-7389604)
chr5 (392-466)||(28525369-28525442)
chr5 (392-446)||(32094142-32094196)
chr5 (391-455)||(19059746-19059809)
chr5 (389-453)||(30772400-30772463)
chr5 (392-466)||(12686162-12686235)
chr5 (392-466)||(16215157-16215230)
chr5 (398-466)||(14610252-14610321)
chr5 (392-456)||(41297390-41297453)
chr5 (398-453)||(8706454-8706508)
chr5 (80-112)||(32096636-32096668)
chr5 (414-447)||(26316796-26316829)
[»] chr6 (16 HSPs)
chr6 (275-437)||(25343760-25343922)
chr6 (352-466)||(8662724-8662837)
chr6 (352-466)||(21196964-21197077)
chr6 (359-457)||(6098090-6098191)
chr6 (392-466)||(32035269-32035342)
chr6 (392-456)||(31756196-31756261)
chr6 (392-466)||(21190849-21190922)
chr6 (391-466)||(18778686-18778761)
chr6 (391-466)||(8650785-8650859)
chr6 (392-466)||(4580304-4580377)
chr6 (392-446)||(25354334-25354388)
chr6 (389-466)||(21782733-21782809)
chr6 (393-445)||(6102751-6102803)
chr6 (245-289)||(6098252-6098296)
chr6 (398-446)||(21770546-21770594)
chr6 (397-454)||(17581741-17581797)
[»] chr8 (20 HSPs)
chr8 (352-466)||(32890992-32891105)
chr8 (352-466)||(42992947-42993060)
chr8 (357-446)||(10700132-10700222)
chr8 (383-466)||(1882725-1882808)
chr8 (392-466)||(9935382-9935455)
chr8 (375-465)||(39735514-39735607)
chr8 (391-456)||(39727299-39727366)
chr8 (392-466)||(14799399-14799472)
chr8 (392-466)||(32897116-32897189)
chr8 (391-466)||(7771335-7771409)
chr8 (391-446)||(10705966-10706021)
chr8 (391-456)||(24250216-24250279)
chr8 (352-402)||(31373510-31373560)
chr8 (392-456)||(36819084-36819147)
chr8 (392-466)||(14418044-14418114)
chr8 (397-466)||(1171426-1171493)
chr8 (392-466)||(5542143-5542216)
chr8 (399-456)||(22219706-22219762)
chr8 (392-449)||(39689782-39689838)
chr8 (357-402)||(31398952-31398997)
[»] chr3 (24 HSPs)
chr3 (352-466)||(49151715-49151828)
chr3 (357-466)||(10244282-10244390)
chr3 (362-466)||(11846016-11846119)
chr3 (356-466)||(10766818-10766927)
chr3 (352-466)||(42197105-42197218)
chr3 (352-466)||(38455495-38455606)
chr3 (391-446)||(28964988-28965043)
chr3 (392-466)||(30051085-30051158)
chr3 (377-446)||(17593249-17593318)
chr3 (395-456)||(55003398-55003458)
chr3 (392-466)||(10238195-10238268)
chr3 (392-466)||(10760633-10760706)
chr3 (392-466)||(17055775-17055849)
chr3 (392-466)||(49157782-49157855)
chr3 (392-456)||(48128030-48128093)
chr3 (392-466)||(11839708-11839781)
chr3 (398-454)||(53069043-53069098)
chr3 (390-465)||(24643532-24643607)
chr3 (391-466)||(42191202-42191276)
chr3 (392-466)||(8331890-8331963)
chr3 (79-111)||(11845384-11845416)
chr3 (16-56)||(17592554-17592594)
chr3 (414-453)||(46656800-46656839)
chr3 (392-466)||(13445154-13445227)
[»] chr2 (14 HSPs)
chr2 (355-446)||(31002500-31002591)
chr2 (356-466)||(35090597-35090705)
chr2 (352-466)||(13456203-13456316)
chr2 (392-466)||(28682928-28683001)
chr2 (392-466)||(36750518-36750591)
chr2 (387-446)||(31008478-31008537)
chr2 (392-466)||(30965431-30965505)
chr2 (355-456)||(29833321-29833421)
chr2 (392-456)||(11048536-11048599)
chr2 (398-466)||(35084665-35084732)
chr2 (392-466)||(35438693-35438765)
chr2 (391-466)||(44716786-44716860)
chr2 (392-466)||(13462144-13462217)
chr2 (397-446)||(13149674-13149722)
[»] chr4 (17 HSPs)
chr4 (357-466)||(24288090-24288196)
chr4 (360-466)||(26963292-26963397)
chr4 (352-454)||(49976702-49976803)
chr4 (357-456)||(10739286-10739385)
chr4 (357-456)||(10953055-10953154)
chr4 (356-466)||(48161062-48161168)
chr4 (391-466)||(4632890-4632964)
chr4 (392-466)||(26956812-26956885)
chr4 (392-446)||(33458249-33458303)
chr4 (392-466)||(50168696-50168769)
chr4 (355-465)||(50156049-50156160)
chr4 (392-466)||(10733229-10733302)
chr4 (392-466)||(10946998-10947071)
chr4 (391-466)||(6257187-6257261)
chr4 (372-426)||(33461361-33461414)
chr4 (397-466)||(34308060-34308127)
chr4 (392-466)||(48167281-48167351)
[»] scaffold0012 (1 HSPs)
scaffold0012 (352-466)||(172833-172946)
[»] chr1 (13 HSPs)
chr1 (357-466)||(25387452-25387560)
chr1 (357-466)||(38151923-38152031)
chr1 (392-466)||(50306292-50306365)
chr1 (365-466)||(24963657-24963758)
chr1 (356-430)||(31051688-31051761)
chr1 (392-466)||(44410113-44410186)
chr1 (391-466)||(1078327-1078401)
chr1 (396-466)||(34740089-34740158)
chr1 (391-466)||(24926737-24926810)
chr1 (392-466)||(25381518-25381591)
chr1 (392-439)||(27955290-27955336)
chr1 (391-446)||(31058167-31058221)
chr1 (392-446)||(12183562-12183615)
[»] chr7 (15 HSPs)
chr7 (355-466)||(3817257-3817367)
chr7 (356-466)||(339474-339583)
chr7 (391-466)||(42767276-42767351)
chr7 (391-466)||(12804103-12804177)
chr7 (391-466)||(351889-351963)
chr7 (352-456)||(26381182-26381283)
chr7 (392-466)||(3811152-3811225)
chr7 (391-446)||(20239074-20239128)
chr7 (392-446)||(5979156-5979210)
chr7 (391-453)||(22741900-22741961)
chr7 (392-466)||(28420942-28421015)
chr7 (352-401)||(30219217-30219266)
chr7 (392-454)||(35147986-35148048)
chr7 (414-456)||(43540098-43540140)
chr7 (423-456)||(26383739-26383772)
[»] scaffold0440 (1 HSPs)
scaffold0440 (392-466)||(1176-1250)
[»] scaffold0208 (2 HSPs)
scaffold0208 (357-466)||(6626-6734)
scaffold0208 (391-466)||(12499-12573)
[»] scaffold0236 (1 HSPs)
scaffold0236 (391-466)||(5638-5712)
[»] scaffold1114 (1 HSPs)
scaffold1114 (392-456)||(1198-1261)
[»] scaffold0363 (1 HSPs)
scaffold0363 (392-466)||(605-675)


Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 170 - 446
Target Start/End: Original strand, 32096721 - 32096997
Alignment:
Q  170 tgatatgtcatatgtttccaacaattgaatcaattgaaaattggaatgcaatatatttacgattccgaaaactgaattggatatatatccatcccgtaag 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  32096721 tgatatgtcatatgtttccaacaattgaatcaattgaaaattggaatgcaatatatttacgatttcgaaaactaaattggatatatatccatcccgtaag 32096820  T
Q  270 caaaccatgaaatataatccggtcacagtcatgaaaacaacagcgaccaacataattaaattagggttcataacaaattcatatcccaataaatcaaaca 369  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  32096821 caaaccatgaaatataatccagtcacagtcatgaaaacaacagcgaccaaaaaaattaaattagggttcataacaaattcatatcccaataaatcaaaca 32096920  T
Q  370 tgaagaccgctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaat 446  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  32096921 tgaagaccgctctgataccatttgttggaaatttaggtcttaattaaaaacagatttcataatacatgttcaacaat 32096997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 352 - 466
Target Start/End: Original strand, 28531425 - 28531538
Alignment:
Q  352 atcccaataaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatga 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||| |||||||||||||||||||    
T  28531425 atcccaataaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaa-tataaacagatttcataatacatgttcaacaattatga 28531523  T
Q  452 atcaaaggcggaagc 466  Q
    |||||  ||||||||    
T  28531524 atcaatagcggaagc 28531538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 352 - 466
Target Start/End: Original strand, 12692224 - 12692337
Alignment:
Q  352 atcccaataaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatga 451  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||| | || ||||| ||||||||||||||||||||||||||| |    
T  12692224 atcctaataaatcaaacatgaagacggctctgataccacttgttggaaatttagctcttga-tataaacagatttcataaaacatgttcaacaattataa 12692322  T
Q  452 atcaaaggcggaagc 466  Q
    |||||  ||||||||    
T  12692323 atcaatagcggaagc 12692337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 352 - 455
Target Start/End: Original strand, 19066050 - 19066152
Alignment:
Q  352 atcccaataaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatga 451  Q
    |||||||||||||||||  ||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||| |||||||||| ||||| |    
T  19066050 atcccaataaatcaaacgcgaagaccgctctgataccactagttggaaatttaagtcttaa-taaaaacatatttcataaaccatgttcaacgattataa 19066148  T
Q  452 atca 455  Q
    ||||    
T  19066149 atca 19066152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 360 - 454
Target Start/End: Complemental strand, 24054545 - 24054450
Alignment:
Q  360 aaatcaaacatgaagacc-gctctgataccacttgttggaaattt-aggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatc 454  Q
    ||||||||||  |||||| ||||||||||||||||||| |||||| |||||||||| ||||||| ||||||||||||||||||||||||||| ||||    
T  24054545 aaatcaaacaaaaagacccgctctgataccacttgttgaaaattttaggtcttaat-aaaaacagatttcataaaacatgttcaacaattataaatc 24054450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 391 - 466
Target Start/End: Original strand, 30384358 - 30384434
Alignment:
Q  391 ttgttggaaatttaggtcttaattaaaaa-catatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    ||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||||||||  ||||||||    
T  30384358 ttgttggaaatttaggttttaataaaaaaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagc 30384434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 392 - 466
Target Start/End: Original strand, 7389531 - 7389604
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||||||||||||||||||||| | ||||| ||||||||| ||||||||||||||||||||||||  ||||||||    
T  7389531 tgttggaaatttaggtcttaat-ataaacaaatttcataatacatgttcaacaattatgaatcaatagcggaagc 7389604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 392 - 466
Target Start/End: Original strand, 28525369 - 28525442
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||||||||||||||||||||| | ||||| ||||||||| ||||||||||||||||||||||||  ||||||||    
T  28525369 tgttggaaatttaggtcttaat-ataaacagatttcataatacatgttcaacaattatgaatcaatagcggaagc 28525442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 392 - 446
Target Start/End: Original strand, 32094142 - 32094196
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaat 446  Q
    |||||||||||||||||||||||||||||| |||| |||| ||||||||||||||    
T  32094142 tgttggaaatttaggtcttaattaaaaacagattttataatacatgttcaacaat 32094196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 391 - 455
Target Start/End: Original strand, 19059746 - 19059809
Alignment:
Q  391 ttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatca 455  Q
    ||||||||||||||||||||||| |||||||||||||||||||| | |||||| ||||| |||||    
T  19059746 ttgttggaaatttaggtcttaat-aaaaacatatttcataaaacgtattcaacgattataaatca 19059809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 389 - 453
Target Start/End: Complemental strand, 30772463 - 30772400
Alignment:
Q  389 acttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaat 453  Q
    ||||||||||||||||| ||||||| ||||| | |||||||||||||||||||| ||||||||||    
T  30772463 acttgttggaaatttagttcttaat-aaaaataaatttcataaaacatgttcaataattatgaat 30772400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 392 - 466
Target Start/End: Original strand, 12686162 - 12686235
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||||||||||||| |||| || | ||||| ||||||||||||||||||||||||||| ||||||  ||||||||    
T  12686162 tgttggaaatttagctcttgat-ataaacagatttcataaaacatgttcaacaattataaatcaatagcggaagc 12686235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 392 - 466
Target Start/End: Original strand, 16215157 - 16215230
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||| |||||||||||||| || ||||||| ||||||||| |||| |||||||||||||||||||  ||||||||    
T  16215157 tgttagaaatttaggtctttat-aaaaacagatttcataacacatattcaacaattatgaatcaatagcggaagc 16215230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 398 - 466
Target Start/End: Complemental strand, 14610321 - 14610252
Alignment:
Q  398 aaatttaggtcttaattaaaaa-catatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||||||||||||||  ||||| || ||||||||||||||||||||||||||||||| ||  ||||||||    
T  14610321 aaatttaggtcttaacaaaaaaacagatttcataaaacatgttcaacaattatgaattaatagcggaagc 14610252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 456
Target Start/End: Complemental strand, 41297453 - 41297390
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaa 456  Q
    |||||||||||| ||||||||| | ||| | ||||||||| ||||||||||||||||||||||||    
T  41297453 tgttggaaatttgggtcttaat-ataaagagatttcataatacatgttcaacaattatgaatcaa 41297390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 398 - 453
Target Start/End: Original strand, 8706454 - 8706508
Alignment:
Q  398 aaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaat 453  Q
    |||||||||||||||| ||||| | ||||||||||| |||||||||||||||||||    
T  8706454 aaatttaggtcttaat-aaaaatagatttcataaaatatgttcaacaattatgaat 8706508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 32096636 - 32096668
Alignment:
Q  80 ttgatccatgatcaaatttaattgtttattagc 112  Q
    |||||||||||||||||||||||||||||||||    
T  32096636 ttgatccatgatcaaatttaattgtttattagc 32096668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 447
Target Start/End: Original strand, 26316796 - 26316829
Alignment:
Q  414 taaaaacatatttcataaaacatgttcaacaatt 447  Q
    ||||||||||||||||||||||||||||| ||||    
T  26316796 taaaaacatatttcataaaacatgttcaataatt 26316829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 135; Significance: 4e-70; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 275 - 437
Target Start/End: Complemental strand, 25343922 - 25343760
Alignment:
Q  275 catgaaatataatccggtcacagtcatgaaaacaacagcgaccaacataattaaattagggttcataacaaattcatatcccaataaatcaaacatgaag 374  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25343922 catgaaatataatccggtcacagtcacgaaaacaacggcgaccaacaaaattaaattagggttcataacaaattcatatcccaataaatcaaacatgaag 25343823  T
Q  375 accgctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatg 437  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||| |||||    
T  25343822 accgctctgataccacttgttggaaatttatatcttaattaaaaacaaatttcataatacatg 25343760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 352 - 466
Target Start/End: Original strand, 8662724 - 8662837
Alignment:
Q  352 atcccaataaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatga 451  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||| || ||||| |||||||||||||||||||||||||||||    
T  8662724 atcccaataaatcaaacataaagaccgctctgataccacttgttgtaaatttagctcttaa-tataaacagatttcataaaacatgttcaacaattatga 8662822  T
Q  452 atcaaaggcggaagc 466  Q
    |||||  ||||||||    
T  8662823 atcaatagcggaagc 8662837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 352 - 466
Target Start/End: Original strand, 21196964 - 21197077
Alignment:
Q  352 atcccaataaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatga 451  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| | | |||||||| ||||||||||||||||||||| |||||||    
T  21196964 atcctaataaatcaaacataaagaccgctctgataccacttgttggaaatttaggtcat-agtaaaaacagatttcataaaacatgttcaacgattatga 21197062  T
Q  452 atcaaaggcggaagc 466  Q
    |||||  ||||||||    
T  21197063 atcaatagcggaagc 21197077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 359 - 457
Target Start/End: Complemental strand, 6098191 - 6098090
Alignment:
Q  359 taaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttca---acaattatgaatca 455  Q
    |||||||||||||||||  ||||| ||||||||||||| ||| |||||||||||| ||||||| |||||||||||||||||||   ||||||||||||||    
T  6098191 taaatcaaacatgaagattgctctcataccacttgttgaaaacttaggtcttaataaaaaacaaatttcataaaacatgttcaacaacaattatgaatca 6098092  T
Q  456 aa 457  Q
    ||    
T  6098091 aa 6098090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 392 - 466
Target Start/End: Original strand, 32035269 - 32035342
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||  ||||||||    
T  32035269 tgttggaaatttaggtcttaat-ataaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagc 32035342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 392 - 456
Target Start/End: Original strand, 31756196 - 31756261
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaa-catatttcataaaacatgttcaacaattatgaatcaa 456  Q
    |||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||    
T  31756196 tgttggaaatttaggtcttaataaaaaaacagatttcataaaacatgttcaacaattatgaatcaa 31756261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 392 - 466
Target Start/End: Original strand, 21190849 - 21190922
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||||||||||||||||||| ||| ||||| ||||||||||| ||||||||||||||||||||||  ||||||||    
T  21190849 tgttggaaatttaggtctta-ttataaacagatttcataaaatatgttcaacaattatgaatcaatagcggaagc 21190922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 391 - 466
Target Start/End: Complemental strand, 18778761 - 18778686
Alignment:
Q  391 ttgttggaaatttaggtcttaattaaaaacatatttcat-aaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||||||||||||||||||||||| |||||| ||||||| ||||||||||||| |||||||||||||  ||||||||    
T  18778761 ttgttggaaatttaggtcttaatt-aaaacaaatttcataaaaacatgttcaataattatgaatcaatagcggaagc 18778686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 391 - 466
Target Start/End: Original strand, 8650785 - 8650859
Alignment:
Q  391 ttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||||| |||||||| ||||||| | ||||| ||||||||||||||||||||||||||||||||||  ||||||||    
T  8650785 ttgttgtaaatttagctcttaat-ataaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagc 8650859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 392 - 466
Target Start/End: Original strand, 4580304 - 4580377
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||||||||||||||||||||| | ||||| ||||||||| ||||||||||||| ||||||||||  ||||||||    
T  4580304 tgttggaaatttaggtcttaat-ataaacagatttcataatacatgttcaacaactatgaatcaatagcggaagc 4580377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 392 - 446
Target Start/End: Complemental strand, 25354388 - 25354334
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaat 446  Q
    |||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||    
T  25354388 tgttggaaatttagatcttaattaaaaacagatttcataatacatgttcaacaat 25354334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 389 - 466
Target Start/End: Original strand, 21782733 - 21782809
Alignment:
Q  389 acttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    ||||||| ||||||||||||||||| | ||||| ||||||||| ||||||||||||||||| ||||||  ||||||||    
T  21782733 acttgttagaaatttaggtcttaat-ataaacagatttcataatacatgttcaacaattataaatcaatagcggaagc 21782809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 393 - 445
Target Start/End: Complemental strand, 6102803 - 6102751
Alignment:
Q  393 gttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaa 445  Q
    |||||||||||||||||| || ||||||||||||||||||| |||||||||||    
T  6102803 gttggaaatttaggtcttcataaaaaacatatttcataaaatatgttcaacaa 6102751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 6098296 - 6098252
Alignment:
Q  245 attggatatatatccatcccgtaagcaaaccatgaaatataatcc 289  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||    
T  6098296 attggatatatatccatcccgtaaacaaacgatgaaatataatcc 6098252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 446
Target Start/End: Original strand, 21770546 - 21770594
Alignment:
Q  398 aaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaat 446  Q
    |||||||||||||||||||||||| ||||||||| ||||| ||||||||    
T  21770546 aaatttaggtcttaattaaaaacagatttcataatacatgatcaacaat 21770594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 397 - 454
Target Start/End: Complemental strand, 17581797 - 17581741
Alignment:
Q  397 gaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatc 454  Q
    ||||||||| ||| ||| ||||||||| ||||||||||||||||||| ||||||||||    
T  17581797 gaaatttagatctaaat-aaaaacataattcataaaacatgttcaactattatgaatc 17581741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 352 - 466
Target Start/End: Complemental strand, 32891105 - 32890992
Alignment:
Q  352 atcccaataaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatga 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||| |||||||||||||||||||    
T  32891105 atcccaataaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaa-tataaacagatttcataatacatgttcaacaattatga 32891007  T
Q  452 atcaaaggcggaagc 466  Q
    |||||  ||||||||    
T  32891006 atcaatagcggaagc 32890992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 352 - 466
Target Start/End: Original strand, 42992947 - 42993060
Alignment:
Q  352 atcccaataaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatga 451  Q
    |||||||||||||||||||||||   |||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  42992947 atcccaataaatcaaacatgaagtg-gctctgataccacttgatggaaatttaggtcttaattaaaaacagatttcataatacatgttcaacaattatga 42993045  T
Q  452 atcaaaggcggaagc 466  Q
    |||||  ||||||||    
T  42993046 atcaatagcggaagc 42993060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 357 - 446
Target Start/End: Complemental strand, 10700222 - 10700132
Alignment:
Q  357 aataaatcaaacatgaagacc-gctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaat 446  Q
    |||||||||||||||| |||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  10700222 aataaatcaaacatgatgacccgagctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataatacatgtttaacaat 10700132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 383 - 466
Target Start/End: Original strand, 1882725 - 1882808
Alignment:
Q  383 gataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||||||||||||||||||||||||||||||  |||||| |||||||| ||||||||||||||||| |||||||  ||||||||    
T  1882725 gataccacttgttggaaatttaggtcttaatataaaacagatttcatagaacatgttcaacaattaagaatcaatagcggaagc 1882808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 392 - 466
Target Start/End: Complemental strand, 9935455 - 9935382
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||  ||||||||    
T  9935455 tgttggaaatttaggtcttaat-aaaaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagc 9935382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 375 - 465
Target Start/End: Original strand, 39735514 - 39735607
Alignment:
Q  375 accgctctgataccacttgttggaaatttaggtctt-aat--taaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaag 465  Q
    ||||||||||||||||||||||||||||||||| || |||  |||||| | ||||||||||||||||||||||||||||||||||  |||||||    
T  39735514 accgctctgataccacttgttggaaatttaggtttttaataataaaaatagatttcataaaacatgttcaacaattatgaatcaatagcggaag 39735607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 391 - 456
Target Start/End: Original strand, 39727299 - 39727366
Alignment:
Q  391 ttgttggaaatttaggtcttaat--taaaaacatatttcataaaacatgttcaacaattatgaatcaa 456  Q
    |||||||||||||||||||||||  |||||| | ||||||||||||||||||||||||||||||||||    
T  39727299 ttgttggaaatttaggtcttaataataaaaatagatttcataaaacatgttcaacaattatgaatcaa 39727366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 392 - 466
Target Start/End: Original strand, 14799399 - 14799472
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||||||||||||||||||||| | ||||| ||||||||| ||||||||||||||||||||||||  ||||||||    
T  14799399 tgttggaaatttaggtcttaat-ataaacaaatttcataatacatgttcaacaattatgaatcaatagcggaagc 14799472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 392 - 466
Target Start/End: Complemental strand, 32897189 - 32897116
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||||||||||||||||||||| | ||||| ||||||||| ||||||||||||||||||||||||  ||||||||    
T  32897189 tgttggaaatttaggtcttaat-ataaacagatttcataatacatgttcaacaattatgaatcaatagcggaagc 32897116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 391 - 466
Target Start/End: Complemental strand, 7771409 - 7771335
Alignment:
Q  391 ttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    ||||||||||||||||||||||| | ||||| ||||||||| ||||||||||||||||| ||||||  ||||||||    
T  7771409 ttgttggaaatttaggtcttaat-ataaacagatttcataatacatgttcaacaattataaatcaatagcggaagc 7771335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 391 - 446
Target Start/End: Complemental strand, 10706021 - 10705966
Alignment:
Q  391 ttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaat 446  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||    
T  10706021 ttgttggaaatttaggtcttaattaaaaacagatttcataatacatgtttaacaat 10705966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 456
Target Start/End: Complemental strand, 24250279 - 24250216
Alignment:
Q  391 ttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaa 456  Q
    |||||| |||||||||||||||  ||||||||||||||||||||||||| ||||| ||||||||||    
T  24250279 ttgttgaaaatttaggtcttaa--aaaaacatatttcataaaacatgttgaacaaatatgaatcaa 24250216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 352 - 402
Target Start/End: Original strand, 31373510 - 31373560
Alignment:
Q  352 atcccaataaatcaaacatgaagaccgctctgataccacttgttggaaatt 402  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  31373510 atcccaataaatcaaacatgaagaccgttctgataccacttgttagaaatt 31373560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 392 - 456
Target Start/End: Complemental strand, 36819147 - 36819084
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaa 456  Q
    |||||||||||||||||||||| | ||||| || |||||| ||||||||||||||||||||||||    
T  36819147 tgttggaaatttaggtcttaat-ataaacaaatctcataatacatgttcaacaattatgaatcaa 36819084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 466
Target Start/End: Complemental strand, 14418114 - 14418044
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||| |||   ||||||||||  ||||||||    
T  14418114 tgttggaaatttaggtcttaa-taaaaacagatttcataaaacatgtttaac---tatgaatcaatagcggaagc 14418044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 466
Target Start/End: Complemental strand, 1171493 - 1171426
Alignment:
Q  397 gaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||||||||||||||||  |||||| ||||||| |||||| |||||||||||||| ||||  ||||||||    
T  1171493 gaaatttaggtcttaat--aaaacagatttcatgaaacatattcaacaattatgattcaaccgcggaagc 1171426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 466
Target Start/End: Original strand, 5542143 - 5542216
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||||||||||||||| ||||| | ||| | |||| |||| ||||||||||||||||||||||||  ||||||||    
T  5542143 tgttggaaatttaggttttaat-ataaatagattttataatacatgttcaacaattatgaatcaatagcggaagc 5542216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 399 - 456
Target Start/End: Original strand, 22219706 - 22219762
Alignment:
Q  399 aatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaa 456  Q
    ||||||||||||||| ||||| | |||||||||||||||||||| | |||||||||||    
T  22219706 aatttaggtcttaat-aaaaagagatttcataaaacatgttcaatagttatgaatcaa 22219762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 392 - 449
Target Start/End: Complemental strand, 39689838 - 39689782
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattat 449  Q
    ||||||| | |||||| ||||| ||||||| |||||||||||||||||||||||||||    
T  39689838 tgttggagacttaggttttaat-aaaaacagatttcataaaacatgttcaacaattat 39689782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 402
Target Start/End: Original strand, 31398952 - 31398997
Alignment:
Q  357 aataaatcaaacatgaagaccgctctgataccacttgttggaaatt 402  Q
    |||||||||||||| ||||||| | |||||||||||||| ||||||    
T  31398952 aataaatcaaacataaagaccgttttgataccacttgttagaaatt 31398997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 352 - 466
Target Start/End: Complemental strand, 49151828 - 49151715
Alignment:
Q  352 atcccaataaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatga 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||| |||||||||||||||||||    
T  49151828 atcccaataaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaa-tataaacagatttcataatacatgttcaacaattatga 49151730  T
Q  452 atcaaaggcggaagc 466  Q
    |||||  ||||||||    
T  49151729 atcaatagcggaagc 49151715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 357 - 466
Target Start/End: Original strand, 10244282 - 10244390
Alignment:
Q  357 aataaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaa 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||| ||||||||||||||||||||||||||||||||||    
T  10244282 aataaatcaaacatgaagaccgctctgataccacttgttggaaatttagctcttaa-tataaacagatttcataaaacatgttcaacaattatgaatcaa 10244380  T
Q  457 aggcggaagc 466  Q
      ||||||||    
T  10244381 tagcggaagc 10244390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 362 - 466
Target Start/End: Original strand, 11846016 - 11846119
Alignment:
Q  362 atcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcg 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| ||||||||||||||||| ||||||  |||    
T  11846016 atcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaatt-aaaacagattttataatacatgttcaacaattataaatcaatagcg 11846114  T
Q  462 gaagc 466  Q
    |||||    
T  11846115 gaagc 11846119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 356 - 466
Target Start/End: Original strand, 10766818 - 10766927
Alignment:
Q  356 caataaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatca 455  Q
    |||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||| |||||    
T  10766818 caataaatcaaacatgaaggtggctctgataccacttgttggaaatttaggtctt-attaaaaacaaatttcataatacatgttcaacaattataaatca 10766916  T
Q  456 aaggcggaagc 466  Q
    |  ||||||||    
T  10766917 acagcggaagc 10766927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 352 - 466
Target Start/End: Original strand, 42197105 - 42197218
Alignment:
Q  352 atcccaataaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatga 451  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||| | ||||||||| ||||||||||||||| |||    
T  42197105 atcctaataaatcaaacatgaagaccgctctgataccacttgttggaaatataggtcttaa-tataaatagatttcataatacatgttcaacaattgtga 42197203  T
Q  452 atcaaaggcggaagc 466  Q
    |||||  ||||||||    
T  42197204 atcaatagcggaagc 42197218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 352 - 466
Target Start/End: Original strand, 38455495 - 38455606
Alignment:
Q  352 atcccaataaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatga 451  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||   | | | ||||||||| ||||||||||||||||| |    
T  38455495 atcctaataaatcaaacatgaagaccgctctgataccatttgttggaaatttcggtcttaat---ataaagatttcataatacatgttcaacaattataa 38455591  T
Q  452 atcaaaggcggaagc 466  Q
    |||||  ||||||||    
T  38455592 atcaatagcggaagc 38455606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 391 - 446
Target Start/End: Complemental strand, 28965043 - 28964988
Alignment:
Q  391 ttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaat 446  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28965043 ttgttggaaatttaggtcttaattaaaaacagatttcataaaacatgttcaacaat 28964988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 392 - 466
Target Start/End: Original strand, 30051085 - 30051158
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    ||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||  ||||||||    
T  30051085 tgttgaaaatttaggtcttaat-aaaaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagc 30051158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 377 - 446
Target Start/End: Original strand, 17593249 - 17593318
Alignment:
Q  377 cgctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaat 446  Q
    |||||||||| ||||||| |||||||||||||||||||||||| ||||||||||| | ||||||||||||    
T  17593249 cgctctgataacacttgtaggaaatttaggtcttaattaaaaatatatttcataatagatgttcaacaat 17593318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 395 - 456
Target Start/End: Original strand, 55003398 - 55003458
Alignment:
Q  395 tggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaa 456  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  55003398 tggaaatttaggtcttaat-aaaaacagatttcataaaacatgttcaacaattatgaatcaa 55003458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 392 - 466
Target Start/End: Original strand, 10238195 - 10238268
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||||||||||||| ||||||| | ||||| ||||||||||||||||||||||||||||||||||  ||||||||    
T  10238195 tgttggaaatttagctcttaat-ataaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagc 10238268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 392 - 466
Target Start/End: Original strand, 10760633 - 10760706
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||| ||||||  ||||||||    
T  10760633 tgttggaaatttaggtctta-ttaaaaacagatttcataatacatgttcaacaattataaatcaatagcggaagc 10760706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 392 - 466
Target Start/End: Original strand, 17055775 - 17055849
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||| ||||||||||||||||| |||||||  |||||||||| ||||||||||||||||||||||  ||||||||    
T  17055775 tgttcgaaatttaggtcttaataaaaaacagttttcataaaatatgttcaacaattatgaatcaatagcggaagc 17055849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 392 - 466
Target Start/End: Complemental strand, 49157855 - 49157782
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||||||||||||||||||||| | ||||| ||||||||| ||||||||||||||||||||||||  ||||||||    
T  49157855 tgttggaaatttaggtcttaat-ataaacagatttcataatacatgttcaacaattatgaatcaatagcggaagc 49157782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 392 - 456
Target Start/End: Original strand, 48128030 - 48128093
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaa 456  Q
    |||||||||||||||||| ||| ||||||| ||||||| ||||||||||||||||||||||||||    
T  48128030 tgttggaaatttaggtctcaat-aaaaacagatttcatgaaacatgttcaacaattatgaatcaa 48128093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 392 - 466
Target Start/End: Original strand, 11839708 - 11839781
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||||||||||||||||||||| | ||||| ||||||| | ||||||||||||||||||||||||  ||||||||    
T  11839708 tgttggaaatttaggtcttaat-ataaacagatttcatgatacatgttcaacaattatgaatcaatagcggaagc 11839781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 454
Target Start/End: Original strand, 53069043 - 53069098
Alignment:
Q  398 aaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatc 454  Q
    |||||||||||||||| ||||||| |||| |||||||||||||||||||||| ||||    
T  53069043 aaatttaggtcttaat-aaaaacagattttataaaacatgttcaacaattataaatc 53069098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 390 - 465
Target Start/End: Original strand, 24643532 - 24643607
Alignment:
Q  390 cttgttggaaatttaggtcttaattaaaaacatatttcata--aaacatgttcaacaattatgaatcaaaggcggaag 465  Q
    ||||||||||||||||||||||||  |||||| | ||||||  |||||||||||||| |||||||||||  |||||||    
T  24643532 cttgttggaaatttaggtcttaat--aaaacaaacttcatataaaacatgttcaacatttatgaatcaatagcggaag 24643607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 391 - 466
Target Start/End: Original strand, 42191202 - 42191276
Alignment:
Q  391 ttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    ||||||||||| ||||||||||| | ||| | ||||||||| ||||||||||||||| ||||||||  ||||||||    
T  42191202 ttgttggaaatataggtcttaat-ataaatagatttcataatacatgttcaacaattgtgaatcaatagcggaagc 42191276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 466
Target Start/End: Complemental strand, 8331963 - 8331890
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||||||||||||| ||||||| | ||| | |||| |||||||||||||||||||||| ||||||  ||||||||    
T  8331963 tgttggaaatttagctcttaat-ataaatagattttataaaacatgttcaacaattataaatcaatagcggaagc 8331890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 11845384 - 11845416
Alignment:
Q  79 cttgatccatgatcaaatttaattgtttattag 111  Q
    |||||||||||||||||||||||||||||||||    
T  11845384 cttgatccatgatcaaatttaattgtttattag 11845416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 17592554 - 17592594
Alignment:
Q  16 attaaatatatatggatataacaagattaaatcggcagagg 56  Q
    |||||||||||||||||| | ||||||||||||||||||||    
T  17592554 attaaatatatatggatacagcaagattaaatcggcagagg 17592594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 453
Target Start/End: Complemental strand, 46656839 - 46656800
Alignment:
Q  414 taaaaacatatttcataaaacatgttcaacaattatgaat 453  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  46656839 taaaaacatatttcataaaacatgttcaataaatatgaat 46656800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 466
Target Start/End: Complemental strand, 13445227 - 13445154
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||| ||||||||||||| ||| ||||| | |||| ||| |||||||||||||||||| ||||||  ||||||||    
T  13445227 tgttagaaatttaggtctaaat-aaaaatagatttgatagaacatgttcaacaattataaatcaatagcggaagc 13445154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 355 - 446
Target Start/End: Complemental strand, 31002591 - 31002500
Alignment:
Q  355 ccaataaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaat 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  31002591 ccaataaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaattaaaaacagatttcataatacatgttcaacaat 31002500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 356 - 466
Target Start/End: Original strand, 35090597 - 35090705
Alignment:
Q  356 caataaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatca 455  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||    
T  35090597 caataaatcaaacatgaagaccgctctgataccacttgtt-gaaatttaggtcttaa-tataaacagatttcataaaacatgttcaacaattatgaatca 35090694  T
Q  456 aaggcggaagc 466  Q
    |  ||||||||    
T  35090695 atagcggaagc 35090705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 352 - 466
Target Start/End: Complemental strand, 13456316 - 13456203
Alignment:
Q  352 atcccaataaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatga 451  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||| | ||||||||| ||||||||||||||| |||    
T  13456316 atcctaataaatcaaacatgaagaccgctctgataccacttgttggaaatataggtcttaa-tataaatagatttcataatacatgttcaacaattgtga 13456218  T
Q  452 atcaaaggcggaagc 466  Q
    |||||  ||||||||    
T  13456217 atcaatagcggaagc 13456203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 392 - 466
Target Start/End: Original strand, 28682928 - 28683001
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||  ||||||||    
T  28682928 tgttggaaatttaggtcttaat-ataaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagc 28683001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 392 - 466
Target Start/End: Complemental strand, 36750591 - 36750518
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    ||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||  ||||||||    
T  36750591 tgttggaaatttaagtcttaat-aaaaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagc 36750518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 387 - 446
Target Start/End: Complemental strand, 31008537 - 31008478
Alignment:
Q  387 ccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaat 446  Q
    |||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  31008537 ccacctgttggaaatttaggtcttaattaaaaacagatttcataatacatgttcaacaat 31008478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 392 - 466
Target Start/End: Complemental strand, 30965505 - 30965431
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||| ||||||||||||||||||||||||| ||||||||| |||||||||||||| || ||||||  ||||||||    
T  30965505 tgttagaaatttaggtcttaattaaaaacagatttcataatacatgttcaacaatcataaatcaatagcggaagc 30965431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 355 - 456
Target Start/End: Complemental strand, 29833421 - 29833321
Alignment:
Q  355 ccaataaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatc 454  Q
    |||||||||||||||||||||| |||||||||| ||||||| |||||||||||  ||| || ||| | ||||||||| ||||||| || |||| ||||||    
T  29833421 ccaataaatcaaacatgaagactgctctgatactacttgttagaaatttaggt-ataaatataaagagatttcataatacatgtttaataattgtgaatc 29833323  T
Q  455 aa 456  Q
    ||    
T  29833322 aa 29833321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 392 - 456
Target Start/End: Original strand, 11048536 - 11048599
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaa 456  Q
    |||||||||||||||||||| ||||||| | |||||||||||||||| |||||||||||||||||    
T  11048536 tgttggaaatttaggtctta-ttaaaaataaatttcataaaacatgtccaacaattatgaatcaa 11048599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 398 - 466
Target Start/End: Original strand, 35084665 - 35084732
Alignment:
Q  398 aaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||  ||||||||    
T  35084665 aaatttaggtcttaat-ataaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagc 35084732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 392 - 466
Target Start/End: Original strand, 35438693 - 35438765
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    ||||||||||||||| ||||||  |||||| |||||||||||||||||||||| |||||||||||  ||||||||    
T  35438693 tgttggaaatttaggccttaat--aaaacaaatttcataaaacatgttcaacagttatgaatcaatagcggaagc 35438765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 391 - 466
Target Start/End: Original strand, 44716786 - 44716860
Alignment:
Q  391 ttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    ||||| ||||||||||||||||| ||||||| || ||||||||||||||||||  |||| ||||||  ||||||||    
T  44716786 ttgttagaaatttaggtcttaat-aaaaacagatatcataaaacatgttcaacggttatcaatcaatagcggaagc 44716860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 466
Target Start/End: Complemental strand, 13462217 - 13462144
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||||||||| ||||||||||| | ||| | ||||||||| ||||||||||||||| ||||||||  ||||||||    
T  13462217 tgttggaaatataggtcttaat-ataaatagatttcataatacatgttcaacaattgtgaatcaatagcggaagc 13462144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 446
Target Start/End: Original strand, 13149674 - 13149722
Alignment:
Q  397 gaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaat 446  Q
    ||||||||||||||||| | ||||| ||||||||| ||||||||||||||    
T  13149674 gaaatttaggtcttaat-ataaacagatttcataatacatgttcaacaat 13149722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 357 - 466
Target Start/End: Complemental strand, 24288196 - 24288090
Alignment:
Q  357 aataaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaa 456  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| | ||||||||||||||||||||||||||||||||||    
T  24288196 aataaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaat---aaatagatttcataaaacatgttcaacaattatgaatcaa 24288100  T
Q  457 aggcggaagc 466  Q
      ||||||||    
T  24288099 tagcggaagc 24288090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 360 - 466
Target Start/End: Original strand, 26963292 - 26963397
Alignment:
Q  360 aaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaagg 459  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||  |    
T  26963292 aaatcaaacatgaagaccgctctgatactacttgttggaaatttaggtcttaa-taaaaacaaatttcataaaacatgttcaacgattatgaatcaatag 26963390  T
Q  460 cggaagc 466  Q
    |||||||    
T  26963391 cggaagc 26963397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 352 - 454
Target Start/End: Complemental strand, 49976803 - 49976702
Alignment:
Q  352 atcccaataaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatga 451  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||| | |||| |||||||| |||||||||||||| ||||||||||||||    
T  49976803 atcccaataaatcaaacatgaagaccactctgataccacttgttagaaatttagattttaa-taaaaacaaatttcataaaacatattcaacaattatga 49976705  T
Q  452 atc 454  Q
    |||    
T  49976704 atc 49976702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 357 - 456
Target Start/End: Original strand, 10739286 - 10739385
Alignment:
Q  357 aataaatcaaacatgaagacc-gctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatca 455  Q
    |||||| |||||||| ||||| ||||||||||||||||||||| |||||| ||||||  | ||||| |||||||||||||||||||||||||||||||||    
T  10739286 aataaaccaaacatgtagacctgctctgataccacttgttggacatttagctcttaac-ataaacagatttcataaaacatgttcaacaattatgaatca 10739384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 357 - 456
Target Start/End: Original strand, 10953055 - 10953154
Alignment:
Q  357 aataaatcaaacatgaagacc-gctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatca 455  Q
    |||||| |||||||| ||||| ||||||||||||||||||||| |||||| ||||||  | ||||| |||||||||||||||||||||||||||||||||    
T  10953055 aataaaccaaacatgtagacctgctctgataccacttgttggacatttagctcttaac-ataaacagatttcataaaacatgttcaacaattatgaatca 10953153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 356 - 466
Target Start/End: Complemental strand, 48161168 - 48161062
Alignment:
Q  356 caataaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatca 455  Q
    |||||||||||||||||||   |||||||||||||||||| |||||||||||||||| |||||| | ||||||||||| |||||||||   |||||||||    
T  48161168 caataaatcaaacatgaaggtggctctgataccacttgttagaaatttaggtcttaa-taaaaatagatttcataaaatatgttcaac---tatgaatca 48161073  T
Q  456 aaggcggaagc 466  Q
    |  ||||||||    
T  48161072 atagcggaagc 48161062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 391 - 466
Target Start/End: Complemental strand, 4632964 - 4632890
Alignment:
Q  391 ttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||  ||||||||    
T  4632964 ttgttggaaatttaggtcttaat-aaaaacagatttcataaaacatgttcaacaattattaatcaacagcggaagc 4632890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 392 - 466
Target Start/End: Original strand, 26956812 - 26956885
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||  ||||||||    
T  26956812 tgttggaaatttaggtcttaat-aaaaacagatttcataaaacatgttcaacgattatgaatcaatagcggaagc 26956885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 392 - 446
Target Start/End: Original strand, 33458249 - 33458303
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaat 446  Q
    |||||||||||||||||||||||||||||| ||||||||| | ||||||||||||    
T  33458249 tgttggaaatttaggtcttaattaaaaacagatttcataatatatgttcaacaat 33458303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 392 - 466
Target Start/End: Complemental strand, 50168769 - 50168696
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||||||||||||||||||||| |||| || ||| ||||||||| ||||||||||||||||||||  ||||||||    
T  50168769 tgttggaaatttaggtcttaat-aaaaccagattacataaaacacgttcaacaattatgaatcaatagcggaagc 50168696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 355 - 465
Target Start/End: Complemental strand, 50156160 - 50156049
Alignment:
Q  355 ccaataaatcaaa-catgaagacc-gctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaa 452  Q
    ||||||||||||| |||||||||| ||||||||| ||||||||  |||||||  | ||||| |||| || |||  |||||||||||||||||||||||||    
T  50156160 ccaataaatcaaaacatgaagacccgctctgatatcacttgttaaaaatttaattgttaat-aaaaccagattatataaaacatgttcaacaattatgaa 50156062  T
Q  453 tcaaaggcggaag 465  Q
    ||||  |||||||    
T  50156061 tcaatagcggaag 50156049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 392 - 466
Target Start/End: Original strand, 10733229 - 10733302
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    ||||||| |||||| ||||||  | ||||| ||||||||||||||||||||||||||||||||||  ||||||||    
T  10733229 tgttggacatttagctcttaac-ataaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagc 10733302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 392 - 466
Target Start/End: Original strand, 10946998 - 10947071
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    ||||||| |||||| ||||||  | ||||| ||||||||||||||||||||||||||||||||||  ||||||||    
T  10946998 tgttggacatttagctcttaac-ataaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagc 10947071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 391 - 466
Target Start/End: Original strand, 6257187 - 6257261
Alignment:
Q  391 ttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    ||||||||||||||||||||||| | ||| | ||||||||| |||||||||||||| || ||||||  ||||||||    
T  6257187 ttgttggaaatttaggtcttaat-ataaatagatttcataatacatgttcaacaatcataaatcaacagcggaagc 6257261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 426
Target Start/End: Original strand, 33461361 - 33461414
Alignment:
Q  372 aagaccgctctgataccacttgttggaaatttaggtcttaattaaaaacatattt 426  Q
    |||||||||||||||||| ||||| ||||||||  ||||||||||||||||||||    
T  33461361 aagaccgctctgatacca-ttgttagaaatttaaatcttaattaaaaacatattt 33461414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 466
Target Start/End: Original strand, 34308060 - 34308127
Alignment:
Q  397 gaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||||||| ||||||||  |||||| |||| ||||||||||||||| |||||||||||||  ||||||||    
T  34308060 gaaatttacgtcttaat--aaaacagattttataaaacatgttcaataattatgaatcaatagcggaagc 34308127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 466
Target Start/End: Complemental strand, 48167351 - 48167281
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||| |||||||||||||||| |||||| | ||||||||||| |||||||||   ||||||||||  ||||||||    
T  48167351 tgttagaaatttaggtcttaa-taaaaatagatttcataaaatatgttcaac---tatgaatcaatagcggaagc 48167281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 352 - 466
Target Start/End: Original strand, 172833 - 172946
Alignment:
Q  352 atcccaataaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatga 451  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| || |||||  ||||||||||||||||| ||||||||||    
T  172833 atcccaataaatcaaacatgaagaccgctctgatactacttgttgaaaatttaggtcttaa-tataaacaggtttcataaaacatgttctacaattatga 172931  T
Q  452 atcaaaggcggaagc 466  Q
    |||||  ||||||||    
T  172932 atcaatagcggaagc 172946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 9e-34; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 357 - 466
Target Start/End: Original strand, 25387452 - 25387560
Alignment:
Q  357 aataaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaa 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| || ||||| ||||||||||||||||||||||| ||||||||||    
T  25387452 aataaatcaaacatgaagaccgctctgataccacttgttggaaatatagatcttaa-tataaacagatttcataaaacatgttcaacaaatatgaatcaa 25387550  T
Q  457 aggcggaagc 466  Q
      ||||||||    
T  25387551 tagcggaagc 25387560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 357 - 466
Target Start/End: Original strand, 38151923 - 38152031
Alignment:
Q  357 aataaatcaaacatgaagac-cgctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatca 455  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||  | ||||||||  |||| | ||||||||||||||||||||||||||| |||||    
T  38151923 aataaatcaaacatgaagactcgctctgataccacttgttagaaatccaagtcttaat--aaaatagatttcataaaacatgttcaacaattattaatca 38152020  T
Q  456 aaggcggaagc 466  Q
    |  ||||||||    
T  38152021 acagcggaagc 38152031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 392 - 466
Target Start/End: Complemental strand, 50306365 - 50306292
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||  ||||||||    
T  50306365 tgttggaaatttaggtcttaat-ataaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagc 50306292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 365 - 466
Target Start/End: Original strand, 24963657 - 24963758
Alignment:
Q  365 aaacatgaagacc-gctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcgga 463  Q
    ||||||||||||  ||||| |||||| |||||| |||||||| ||||||| ||||||| ||||||||||||||||||||| | ||||||||||  |||||    
T  24963657 aaacatgaagacatgctctaataccatttgttgaaaatttagatcttaat-aaaaacagatttcataaaacatgttcaacgaatatgaatcaatagcgga 24963755  T
Q  464 agc 466  Q
    |||    
T  24963756 agc 24963758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 356 - 430
Target Start/End: Complemental strand, 31051761 - 31051688
Alignment:
Q  356 caataaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcata 430  Q
    ||||| |||||||||||||||||||||||||||||||||| | |||||||||||||| || ||||| ||||||||    
T  31051761 caatagatcaaacatgaagaccgctctgataccacttgttaggaatttaggtcttaa-tataaacagatttcata 31051688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 392 - 466
Target Start/End: Complemental strand, 44410186 - 44410113
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||||||||||||||||||| | ||||||| ||||||||||||||||||||| ||||||||||||  ||||||||    
T  44410186 tgttggaaatttaggtcttact-aaaaacagatttcataaaacatgttcaacgattatgaatcaatagcggaagc 44410113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 391 - 466
Target Start/End: Complemental strand, 1078401 - 1078327
Alignment:
Q  391 ttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    ||||||||||||||||||||||| | ||||| ||||||||| ||||||||||||||||| ||||||  ||||||||    
T  1078401 ttgttggaaatttaggtcttaat-ataaacagatttcataatacatgttcaacaattattaatcaatagcggaagc 1078327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 396 - 466
Target Start/End: Complemental strand, 34740158 - 34740089
Alignment:
Q  396 ggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||||||||||||||||| | ||||| ||||||||||||||||||| ||||||||||||||  ||||||||    
T  34740158 ggaaatttaggtcttaat-ataaacagatttcataaaacatgttcatcaattatgaatcaatagcggaagc 34740089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 391 - 466
Target Start/End: Original strand, 24926737 - 24926810
Alignment:
Q  391 ttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||||| |||||||||||||||| ||||||| ||| ||||||||||||||||| ||||||||||||  ||||||||    
T  24926737 ttgttgaaaatttaggtcttaat-aaaaacagatt-cataaaacatgttcaacgattatgaatcaatagcggaagc 24926810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 392 - 466
Target Start/End: Original strand, 25381518 - 25381591
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||||||||| ||||||||||| | ||||| ||||||||| ||||||||||||| ||||||||||  ||||||||    
T  25381518 tgttggaaatataggtcttaat-ataaacagatttcataatacatgttcaacaactatgaatcaatagcggaagc 25381591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 439
Target Start/End: Complemental strand, 27955336 - 27955290
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgtt 439  Q
    |||| ||||||||||||||||| ||||||| |||||||||||||||||    
T  27955336 tgttagaaatttaggtcttaat-aaaaacagatttcataaaacatgtt 27955290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 446
Target Start/End: Complemental strand, 31058221 - 31058167
Alignment:
Q  391 ttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaat 446  Q
    ||||| ||||||||||||||||| | ||||| ||||||||| ||||||||||||||    
T  31058221 ttgttagaaatttaggtcttaat-ataaacagatttcataatacatgttcaacaat 31058167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 446
Target Start/End: Original strand, 12183562 - 12183615
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaat 446  Q
    |||||||||||||| ||||||| ||||| | ||||||||||| ||||||||||||    
T  12183562 tgttggaaatttagttcttaat-aaaaatagatttcataaaatatgttcaacaat 12183615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 355 - 466
Target Start/End: Original strand, 3817257 - 3817367
Alignment:
Q  355 ccaataaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatc 454  Q
    |||||| ||||||||| || |||||||||||||||||||||||||||||||||||||| || ||||| ||||||||| ||||||||||||||||||||||    
T  3817257 ccaatagatcaaacataaacaccgctctgataccacttgttggaaatttaggtcttaa-tataaacagatttcataatacatgttcaacaattatgaatc 3817355  T
Q  455 aaaggcggaagc 466  Q
    ||  ||||||||    
T  3817356 aatagcggaagc 3817367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 356 - 466
Target Start/End: Complemental strand, 339583 - 339474
Alignment:
Q  356 caataaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatca 455  Q
    |||||||||||||||||||   |||||||||||||||||||||||||||| |||||| || ||| | |||||||||||||||||||||||||||||||||    
T  339583 caataaatcaaacatgaaggtggctctgataccacttgttggaaatttagctcttaa-tataaagagatttcataaaacatgttcaacaattatgaatca 339485  T
Q  456 aaggcggaagc 466  Q
    |  ||||||||    
T  339484 atagcggaagc 339474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 391 - 466
Target Start/End: Original strand, 42767276 - 42767351
Alignment:
Q  391 ttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||  ||||||||    
T  42767276 ttgttggaaatttaggtcttaattaaaaacagatttcataatacatgttcaacaattatgaatcaatagcggaagc 42767351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 391 - 466
Target Start/End: Complemental strand, 12804177 - 12804103
Alignment:
Q  391 ttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||  ||||||||    
T  12804177 ttgttggaaatttaggtcttaat-aaaaacagatttcataaaacatgttcaacgattatgaatcaatagcggaagc 12804103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 391 - 466
Target Start/End: Complemental strand, 351963 - 351889
Alignment:
Q  391 ttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    ||||||||||||||| ||||||| | ||||| ||||||||||||||||||||||||||||||||||  ||||||||    
T  351963 ttgttggaaatttagctcttaat-ataaacagatttcataaaacatgttcaacaattatgaatcaacagcggaagc 351889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 352 - 456
Target Start/End: Complemental strand, 26381283 - 26381182
Alignment:
Q  352 atcccaataaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatga 451  Q
    |||||||||||||||| ||||| || ||||||||| ||||  || ||||||||||||| |||  |||| | ||||||||| |||||||||||||||||||    
T  26381283 atcccaataaatcaaatatgaacac-gctctgatatcactcattagaaatttaggtctaaat--aaaatagatttcataagacatgttcaacaattatga 26381187  T
Q  452 atcaa 456  Q
    |||||    
T  26381186 atcaa 26381182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 392 - 466
Target Start/End: Original strand, 3811152 - 3811225
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||||||||| ||||||||||| | ||||| ||||||||| ||||||||||||||||||||||||  ||||||||    
T  3811152 tgttggaaatgtaggtcttaat-ataaacagatttcataatacatgttcaacaattatgaatcaatagcggaagc 3811225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 391 - 446
Target Start/End: Complemental strand, 20239128 - 20239074
Alignment:
Q  391 ttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaat 446  Q
    ||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||    
T  20239128 ttgttggaaatttaggtcttaat-ataaacaaatttcataaaacatgttcaacaat 20239074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 392 - 446
Target Start/End: Original strand, 5979156 - 5979210
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaat 446  Q
    ||||| |||||||||||||||||||||||| ||||||||| ||||||| ||||||    
T  5979156 tgttgaaaatttaggtcttaattaaaaacagatttcataatacatgttgaacaat 5979210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 453
Target Start/End: Original strand, 22741900 - 22741961
Alignment:
Q  391 ttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaat 453  Q
    ||||||||||||||||||| ||| || ||||  ||||||||||||||||||||||||||||||    
T  22741900 ttgttggaaatttaggtctcaat-aagaacaggtttcataaaacatgttcaacaattatgaat 22741961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 392 - 466
Target Start/End: Original strand, 28420942 - 28421015
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||||||||||||| |||| || | ||||| ||||||||||||||||||||||||||| ||||||  ||||||||    
T  28420942 tgttggaaatttagctcttgat-ataaacagatttcataaaacatgttcaacaattataaatcaatagcggaagc 28421015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 352 - 401
Target Start/End: Original strand, 30219217 - 30219266
Alignment:
Q  352 atcccaataaatcaaacatgaagaccgctctgataccacttgttggaaat 401  Q
    |||||||||||||||||||||| |||||||||||||||| |||| |||||    
T  30219217 atcccaataaatcaaacatgaataccgctctgataccacgtgttagaaat 30219266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 392 - 454
Target Start/End: Original strand, 35147986 - 35148048
Alignment:
Q  392 tgttggaaattt-aggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatc 454  Q
    |||||||||||| | |||||||| ||||||| ||||||||||||||||||||||||||| ||||    
T  35147986 tgttggaaattttatgtcttaat-aaaaacagatttcataaaacatgttcaacaattataaatc 35148048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 456
Target Start/End: Complemental strand, 43540140 - 43540098
Alignment:
Q  414 taaaaacatatttcataaaacatgttcaacaattatgaatcaa 456  Q
    |||||||| |||||||| ||||||||||| |||||||||||||    
T  43540140 taaaaacagatttcatagaacatgttcaataattatgaatcaa 43540098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 456
Target Start/End: Complemental strand, 26383772 - 26383739
Alignment:
Q  423 atttcataaaacatgttcaacaattatgaatcaa 456  Q
    ||||||||| ||||||||||||||||||||||||    
T  26383772 atttcataagacatgttcaacaattatgaatcaa 26383739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 392 - 466
Target Start/End: Original strand, 1176 - 1250
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1176 tgttggaaatttaggtcttaattaaaaacagatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 1250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 357 - 466
Target Start/End: Complemental strand, 6734 - 6626
Alignment:
Q  357 aataaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaa-ttatgaatca 455  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| |||||| || ||||| |||||||||| |||||||||||| ||||||||||    
T  6734 aataaatcaaacatgaagacggctctgataccacttgttggaaatttagctcttaa-tataaaca-atttcataaaccatgttcaacaatttatgaatca 6637  T
Q  456 aaggcggaagc 466  Q
    |  ||||||||    
T  6636 atagcggaagc 6626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 466
Target Start/End: Complemental strand, 12573 - 12499
Alignment:
Q  391 ttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaa-ttatgaatcaaaggcggaagc 466  Q
    ||||||||||||||| |||||| || ||||| |||||||||| ||| |||||||| |||||||||||  ||||||||    
T  12573 ttgttggaaatttagctcttaa-tataaaca-atttcataaaccatattcaacaatttatgaatcaatagcggaagc 12499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 391 - 466
Target Start/End: Complemental strand, 5712 - 5638
Alignment:
Q  391 ttgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    ||||||||||||||| |||| || | ||||| ||||||||||||||||||||||||||||||||||  ||||||||    
T  5712 ttgttggaaatttagctcttgat-ataaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagc 5638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1114 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold1114
Description:

Target: scaffold1114; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 392 - 456
Target Start/End: Complemental strand, 1261 - 1198
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaa 456  Q
    ||||||||||| || ||||||| ||||||| ||||||||||||||||||||| ||||||||||||    
T  1261 tgttggaaattcagatcttaat-aaaaacagatttcataaaacatgttcaaccattatgaatcaa 1198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 466
Target Start/End: Original strand, 605 - 675
Alignment:
Q  392 tgttggaaatttaggtcttaattaaaaacatatttcataaaacatgttcaacaattatgaatcaaaggcggaagc 466  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||| |||   ||||||||||  ||||||||    
T  605 tgttggaaatttaggtcttaa-taaaaacagatttcataaaacatgtttaac---tatgaatcaatagcggaagc 675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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