View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1831_low_14 (Length: 439)
Name: NF1831_low_14
Description: NF1831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1831_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 10812287 - 10811970
Alignment:
| Q |
1 |
tagcatcatctaccctgaagaaagcaacttcaaagaacacaaaaacaagggatcatcgcttgaaaagggtacaaaacatagcacaaatctagctcaagca |
100 |
Q |
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| T |
10812287 |
tagcatcatctaccctgaagaaagcaacttcaaagaacacaaaaataagggatcatcgcttgaaaagggtacaaaacgtagcacaaatctagctcaagca |
10812188 |
T |
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| Q |
101 |
caaaagcttcacaggttgggattctcttacattgcaacatcttttctttacatagtaattaaggttaaagcattttacaatggtttccttggagatgttg |
200 |
Q |
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| T |
10812187 |
caaaagcttcacaggttgggattctcttacattgcaacatcttttctttacatagtaattaaggttaaagaattttacaatggtttccttggagatgttg |
10812088 |
T |
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| Q |
201 |
ctagtgaatcaaggatgatgggaattgatgcaccaatggcagaaccatatttctctgttccagttattccaaattaaccaagtacaaatattagaagcaa |
300 |
Q |
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| T |
10812087 |
ctagtgaatcaaggatgatgggaattgatgcaccaatggcagaaccatatttctctgttccagttattccaaatt----------aaataataggagcaa |
10811998 |
T |
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| Q |
301 |
tatcatgcatgattgtaatgtctagtat |
328 |
Q |
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| T |
10811997 |
tatcatgcatgattataatgtctagtat |
10811970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 424
Target Start/End: Complemental strand, 10811915 - 10811878
Alignment:
| Q |
387 |
tagtatcaaatttgaggtgaacttttgtagtaattaat |
424 |
Q |
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| T |
10811915 |
tagtatcaaatttgaggtgaacttttgtagtaattaat |
10811878 |
T |
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