View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1831_low_18 (Length: 407)
Name: NF1831_low_18
Description: NF1831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1831_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 97 - 394
Target Start/End: Complemental strand, 32254234 - 32253933
Alignment:
| Q |
97 |
caatgcaacgaatgatatagagacttgaatcctctgcaatcggctatagattgttagat----taagagagatgcagctggctgcttataaagttagctg |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32254234 |
caatgcaacgaatgatatagagacttgaatcctctgcaatcggctatagattgttagatagattaagagagatgcagctggctgcttataaagttagctg |
32254135 |
T |
|
| Q |
193 |
caaaggattcactttgtatttgtacacttgataaatttgttggttttgtacattattaacaaaattgtgaattaacaaagctcttcgaatggttaatagg |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32254134 |
caaaggattcactttgtatttgtacacttgataaatttgttggttttgtacattattaacaaaattgtgaattaacaaagctcttcgaatcgttaatagg |
32254035 |
T |
|
| Q |
293 |
ttactaaatcttgattattaacatttaaaatcatagtcaatacagttgattatatgattaatgaattattcaatcttgatttaattaaacgtttgttggt |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32254034 |
ttactaaatcttgattattaacatttaaaatcatagtcaatacagttgattacatgattaatgaattattcaatcttgatttaattaaacgtttgttggt |
32253935 |
T |
|
| Q |
393 |
tt |
394 |
Q |
| |
|
|| |
|
|
| T |
32253934 |
tt |
32253933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 32216842 - 32216756
Alignment:
| Q |
7 |
tggacatcatcaccaatgccctgtgtaggtagatattgctgataatttcagtcattgttgtaaaagtataagccaagtaagttttcc |
93 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
32216842 |
tggacatcttcaccaatgcactgtgtaggtagatattgctggtaatttcagtcattgctgtaaaagtataagcgaagtaagttttcc |
32216756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 32215998 - 32216084
Alignment:
| Q |
10 |
acatcatcaccaatgccctgtgtaggtag---atattgctgataatttcagtcattgttgtaaaagtataagccaagtaagttttcc |
93 |
Q |
| |
|
||||| ||||||||||| ||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
32215998 |
acatcttcaccaatgccttgtgtaggtagtagatattgctggtaatttcagtcattgctgtaaaagtataagccaagtaaattttcc |
32216084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 16837736 - 16837668
Alignment:
| Q |
10 |
acatcatcaccaatgccctgtgtaggtagatattgctgataatttcagtcattgttgtaaaagtataag |
78 |
Q |
| |
|
||||| ||||||||| |||||||||||| ||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
16837736 |
acatcttcaccaatgttttgtgtaggtagacattgctgccaatttcagtcattgctgtaaaagtataag |
16837668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University