View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1831_low_19 (Length: 390)
Name: NF1831_low_19
Description: NF1831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1831_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 14 - 377
Target Start/End: Original strand, 1140640 - 1141003
Alignment:
| Q |
14 |
gaactataagaatttttcacatagactagttaaagctaaaatatatgaatttttattgttcatgcagaaggtaatgtggggtgaaaatagcatgatagaa |
113 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
1140640 |
gaactataagattttttcacatagactagttaaagctaaaatatatgaatttttattgttcatgcaggaggtaaagtggggtgaaaatagcatgatagaa |
1140739 |
T |
|
| Q |
114 |
gcagaaagacgtctactagcaaatgcactgcttgatttctcaaaccaacgttttgtactactttcagaacattgcataccattgttcaatttctccacaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1140740 |
gcagaaagacgtctactagcaaatgcactgcttgatttctcaaaccaacgttttgtactactttcagaacattgcataccattgttcaatttctccacaa |
1140839 |
T |
|
| Q |
214 |
tctacacttatctaatgaactcaaaacaaacatttgtggaagccattgatataccaagtgatgtaggacgtggaagatataaccgtagaatgacaccatt |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1140840 |
tctacacttatctaatgaactcaaaacaaacatttgtggaagcaattgatataccaagtgatgtaggacgtggaagatataaccgtagaatgagaccatt |
1140939 |
T |
|
| Q |
314 |
gattcaactttcacaatggagtaaaggggctcaatggttccaaattgatcgttatcttgcggtt |
377 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1140940 |
gattcaactttcacaatggagaaaaggggctcaatggttccaaattgatcgttatcttgcggtt |
1141003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 12 - 378
Target Start/End: Original strand, 1137177 - 1137543
Alignment:
| Q |
12 |
atgaactataagaatttttcacatagactagttaaagctaaaatatatgaatttttattgttcatgcagaaggtaatgtggggtgaaaatagcatgatag |
111 |
Q |
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| T |
1137177 |
atgaactataagaatttttcacatagactagttaaagctaaaatatatgaatttttattgttcatgcagaaggtaaagtggggtgaaaatagcatgatag |
1137276 |
T |
|
| Q |
112 |
aagcagaaagacgtctactagcaaatgcactgcttgatttctcaaaccaacgttttgtactactttcagaacattgcataccattgttcaatttctccac |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1137277 |
aagcagaaagacgtctactagcaaatgcactgcttgatttctcaaaccaacgttttgtcctactttcagaacattgcataccattgttcaatttcttcac |
1137376 |
T |
|
| Q |
212 |
aatctacacttatctaatgaactcaaaacaaacatttgtggaagccattgatataccaagtgatgtaggacgtggaagatataaccgtagaatgacacca |
311 |
Q |
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| T |
1137377 |
aatctacacttatctaatgaaatcaaaacaaacatttgtggaagctaatgatattccaggtcgtgtaggacgtgtaagatataaccgtagaatgtgtcca |
1137476 |
T |
|
| Q |
312 |
ttgattcaactttcacaatggagtaaaggggctcaatggttccaaattgatcgttatcttgcggttc |
378 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1137477 |
ttgattcaactttcacaatggagaaaaggggctcaatggttccaaattgatcgttatcttgcagttc |
1137543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 235
Target Start/End: Complemental strand, 22841770 - 22841664
Alignment:
| Q |
129 |
ctagcaaatgcactgcttgatttctcaaaccaacgttttgtactactttcagaacattgcataccattgttcaatttctccacaatctacacttatctaa |
228 |
Q |
| |
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|||||||| || || || ||||||||||||||||| || || || | |||||| ||||||||| | ||||| ||||| ||| ||||| ||||||||| |
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| T |
22841770 |
ctagcaaacgcgcttctcgatttctcaaaccaacgattcgttctcatatcagaatcatgcataccactcttcaacttctcaacagtctactcttatctaa |
22841671 |
T |
|
| Q |
229 |
tgaactc |
235 |
Q |
| |
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||||||| |
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|
| T |
22841670 |
tgaactc |
22841664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 74 - 380
Target Start/End: Complemental strand, 54474869 - 54474563
Alignment:
| Q |
74 |
catgcagaaggtaatgtggggtgaaaatagcatgatagaagcagaaagacgtctactagcaaatgcactgcttgatttctcaaaccaacgttttgtacta |
173 |
Q |
| |
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||||||| |||||| ||||||||| |||||||||||||| || || | ||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
54474869 |
catgcaggaggtaaagtggggtgagaatagcatgatagaggctgagaaacgtctactagcaaatgcattgctcgatttctcaaaccaacgttttgtacta |
54474770 |
T |
|
| Q |
174 |
ctttcagaacattgcataccattgttcaatttctccacaatctacacttatctaatgaactcaaaacaaacatttgtggaagccattgatataccaagtg |
273 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| || | ||||||||||||| | |||||| | | ||| |
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|
| T |
54474769 |
ctttcagaatcatgcataccattgttcaatttctccacaatatacacttatctaatgaactcaagactatcatttgtggaagctaatgatatccgaggtg |
54474670 |
T |
|
| Q |
274 |
atgtaggacgtggaagatataaccgtagaatgacaccattgattcaactttcacaatggagtaaaggggctcaatggttccaaattgatcgttatcttgc |
373 |
Q |
| |
|
||||||||||||||| ||| |||||| ||||||||| |||||||||||||||| |||||| |||||||||| |||||||||||||| ||||| |
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| T |
54474669 |
cacaaggacgtggaagatacaactaccgaatgaggccattgattgaactttcacaatggagaaaagggtctcaatggtttcaaattgatcgttaccttgc |
54474570 |
T |
|
| Q |
374 |
ggttcat |
380 |
Q |
| |
|
|||||| |
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|
| T |
54474569 |
agttcat |
54474563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 146; Significance: 8e-77; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 45 - 366
Target Start/End: Complemental strand, 31266948 - 31266628
Alignment:
| Q |
45 |
aaagctaaaatatatgaatttttattgttcatgcagaaggtaatgtggggtgaaaatagcatgatagaagcagaaagacgtctactagcaaatgcactgc |
144 |
Q |
| |
|
||||| ||||| ||||| ||| | ||||| |||||| | |||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
31266948 |
aaagccaaaatttatgattttcttttgtt-atgcaggaagtaaagtggggtgagaatagcatgatagaagcagaaagacgtttactagcaaatgcattgc |
31266850 |
T |
|
| Q |
145 |
ttgatttctcaaaccaacgttttgtactactttcagaacattgcataccattgttcaatttctccacaatctacacttatctaatgaactcaaaacaaac |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||| | |||| |
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|
| T |
31266849 |
ttgatttctcaaaccaacgttttgtactactttcagaatcatgcataccattgttcaatttctctacaatctacacttacctaatgaactcagagaaaac |
31266750 |
T |
|
| Q |
245 |
atttgtggaagccattgatataccaagtgatgtaggacgtggaagatataaccgtagaatgacaccattgattcaactttcacaatggagtaaaggggct |
344 |
Q |
| |
|
|||||||||||| ||| || | ||| || |||||||| ||||| ||| || ||||| ||||||||| |||||||||||||||| |||||| | |
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|
| T |
31266749 |
ctttgtggaagcctatgacctagaaggtgccgttggacgtggtagatacaactataaaatgagtccattgattaaactttcacaatggagaaaagggtca |
31266650 |
T |
|
| Q |
345 |
caatggttccaaattgatcgtt |
366 |
Q |
| |
|
|||||||| ||||||||||||| |
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|
| T |
31266649 |
caatggtttcaaattgatcgtt |
31266628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 67 - 258
Target Start/End: Complemental strand, 48323731 - 48323540
Alignment:
| Q |
67 |
tattgttcatgcagaaggtaatgtggggtgaaaatagcatgatagaagcagaaagacgtctactagcaaatgcactgcttgatttctcaaaccaacgttt |
166 |
Q |
| |
|
||||||| |||||| |||||| ||||||||| | |||||||||||| ||||| || |||||||||||||||||| |||||||||||||||||||| | || |
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|
| T |
48323731 |
tattgttgatgcaggaggtaaagtggggtgagactagcatgatagaggcagagaggcgtctactagcaaatgcattgcttgatttctcaaaccaaagatt |
48323632 |
T |
|
| Q |
167 |
tgtactactttcagaacattgcataccattgttcaatttctccacaatctacacttatctaatgaactcaaaacaaacatttgtggaagcca |
258 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||| || |||||||||||||||||||| |||| ||||||||||||| |
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|
| T |
48323631 |
tgtactactttcagaatcatgtataccattgttcaatttctccacaatttatacttatctaatgaactcaaatgaaacctttgtggaagcca |
48323540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 395619 - 395573
Alignment:
| Q |
136 |
atgcactgcttgatttctcaaaccaacgttttgtactactttcagaa |
182 |
Q |
| |
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||||||| |||||||| ||||||||||||||| |||||||||||||| |
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|
| T |
395619 |
atgcactacttgatttatcaaaccaacgttttatactactttcagaa |
395573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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