View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1831_low_20 (Length: 377)

Name: NF1831_low_20
Description: NF1831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1831_low_20
NF1831_low_20
[»] chr7 (14 HSPs)
chr7 (60-367)||(8357806-8358102)
chr7 (69-367)||(8353211-8353504)
chr7 (250-367)||(8359713-8359827)
chr7 (3-63)||(8365489-8365549)
chr7 (60-123)||(8366210-8366272)
chr7 (258-319)||(8349704-8349765)
chr7 (4-63)||(8352048-8352107)
chr7 (255-329)||(8447544-8447619)
chr7 (256-330)||(8408607-8408680)
chr7 (258-319)||(8437052-8437113)
chr7 (1-63)||(8357140-8357203)
chr7 (258-319)||(8481356-8481417)
chr7 (258-327)||(8428636-8428706)
chr7 (258-327)||(8450731-8450801)


Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 60 - 367
Target Start/End: Original strand, 8357806 - 8358102
Alignment:
Q  60 agagactccatgacaaatttaaaacaaagtggtattcccttctttctatactctcaaatttgtcgaatgaaactcaactcataagttctcaacccacaac 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8357806 agagactccatgacaaatttaaaacaaagtggtattcccttctttctatactctcaaatttgtcgaatgaaactcaactcataagttctcaacccacaac 8357905  T
Q  160 tgataaaagatgatggaaaagtagtataatggaggacataaatttatcaaactcaacagcgaagcaatgaatgtctaaaaagaagtcataatacattggt 259  Q
    ||||       ||||||||||||||| | ||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||   |||||||    
T  8357906 tgat-------gatggaaaagtagtaaactggagtacataaatttatcaa-ctcaacagcgaagcaatgaatgtctgaaaagaagtcata---cattggt 8357994  T
Q  260 tttatagctcactcaatctctacatttcacaaagtttccaatgtgggacttctttcttttctttcaaattgaaattgtcactagctattatcttgcctac 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8357995 tttatagctcactcaatctctacatttcacaaagtttccaatgtgggacttctttcttttctttcaaattgaaattgtcactagctattatcttgcctac 8358094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 69 - 367
Target Start/End: Original strand, 8353211 - 8353504
Alignment:
Q  69 atgacaaatttaaaacaaagtggtattcccttctttctatactctcaaatttgtcgaatgaaactcaactcataagttctcaacccacaactgataaaag 168  Q
    |||||||||||||||| ||||||||||||||||||| ||| |||||||||||| |  ||||| ||   |  ||||||||||||||||||| | | |||||    
T  8353211 atgacaaatttaaaactaagtggtattcccttctttttatcctctcaaatttgac--atgaaccttttcgaataagttctcaacccacaattcagaaaag 8353308  T
Q  169 atgatggaaaagtagtataa-----tggaggacataaatttatcaaactcaacagcgaagcaatgaatgtctaaaaagaagtcataatacattggtttta 263  Q
    | ||   |||| ||||| |      ||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||   ||||||||| |    
T  8353309 aaga---aaaactagtaaacgttgctggaggacataaattcatcaa-ctcaacagcgaagtaatgaatgtctaaaaagaagtcata---cattggttt-a 8353400  T
Q  264 tagctcactcaatctctacatttcacaaagtttccaatgtgggacttctttcttttctttcaaattgaaattgtcactagctattatcttgcctacaagt 363  Q
    || ||||||||||||||| ||||||||||||||   || |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  8353401 taactcactcaatctctatatttcacaaagtttttgatatgggacttctttctttacttttaaattgaaattgtcactagctattatcttgcctacaagt 8353500  T

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Target: chr7; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 250 - 367
Target Start/End: Original strand, 8359713 - 8359827
Alignment:
Q  250 atacattggttttatagctcactcaatctctacatttcacaaagtttccaatgtgggacttctttcttttctttcaaattgaaattgtcactagctatta 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||| ||| ||||||||||||||||||||||||||||||    
T  8359713 atacattggttttatagctcactcaatctctacatttcacaaagtttccaa---gggacttctttgtttcctttcaaattgaaattgtcactagctatta 8359809  T
Q  350 tcttgcctacaagtataa 367  Q
    ||| |||| || ||||||    
T  8359810 tctagccttcatgtataa 8359827  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 8365489 - 8365549
Alignment:
Q  3 gatcatatataggtgctataaacataaacataataaaacttgtcaaagaacaatcaaagag 63  Q
    ||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||    
T  8365489 gatcatatataggtgctataaacatcaacataataaaacttaccaaagaacaatcaaagag 8365549  T

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Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 123
Target Start/End: Original strand, 8366210 - 8366272
Alignment:
Q  60 agagactccatgacaaatttaaaacaaagtggtattcccttctttctatactctcaaatttgtc 123  Q
    ||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||    
T  8366210 agagactccatgacaaatttagaacaatgtggtattccctt-tttctatactctcaaatttgtc 8366272  T

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Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 8349704 - 8349765
Alignment:
Q  258 gttttatagctcactcaatctctacatttcacaaagtttccaatgtgggacttctttctttt 319  Q
    ||||||||| ||| ||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  8349704 gttttatagatcagtcactctctacatttcacaaagtttccgatgtgggacttctttctttt 8349765  T

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Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 8352048 - 8352107
Alignment:
Q  4 atcatatataggtgctataaacataaacataataaaacttgtcaaagaacaatcaaagag 63  Q
    |||||||||||||||||||||||| |||||||||||||||  |||||||||| |||||||    
T  8352048 atcatatataggtgctataaacatgaacataataaaacttaccaaagaacaaccaaagag 8352107  T

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Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 255 - 329
Target Start/End: Original strand, 8447544 - 8447619
Alignment:
Q  255 ttggttttatagctcactcaatctctacatttcacaaagtttccaatgtgggacttctttctttt-ctttcaaatt 329  Q
    |||||||||||||||||||| ||||  ||||||||||| | ||| |||||||||||||||||||| ||||||||||    
T  8447544 ttggttttatagctcactcactctcatcatttcacaaattatccgatgtgggacttctttcttttgctttcaaatt 8447619  T

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Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 256 - 330
Target Start/End: Original strand, 8408607 - 8408680
Alignment:
Q  256 tggttttatagctcactcaatctctacatttcacaaagtttccaatgtgggacttctttcttttctttcaaattg 330  Q
    ||||||||||||||| ||| ||| ||||||||| ||||||||| |||||||||||||||| || |||||||||||    
T  8408607 tggttttatagctcattcactctgtacatttcaaaaagtttccgatgtgggacttctttc-ttgctttcaaattg 8408680  T

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Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 8437052 - 8437113
Alignment:
Q  258 gttttatagctcactcaatctctacatttcacaaagtttccaatgtgggacttctttctttt 319  Q
    ||||||||||||||||| ||||  |||||||||| |||||| ||||||||||||||||||||    
T  8437052 gttttatagctcactcactctcatcatttcacaacgtttccgatgtgggacttctttctttt 8437113  T

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Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 8357140 - 8357203
Alignment:
Q  1 cagatcatatataggtgctataaacataaacataataaaacttgtcaa-agaacaatcaaagag 63  Q
    ||||||||| ||||||||||||||||| |||||||||||||||  ||| |||||||||||||||    
T  8357140 cagatcatacataggtgctataaacatgaacataataaaactttgcaacagaacaatcaaagag 8357203  T

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Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 319
Target Start/End: Complemental strand, 8481417 - 8481356
Alignment:
Q  258 gttttatagctcactcaatctctacatttcacaaagtttccaatgtgggacttctttctttt 319  Q
    ||||||||| ||| ||| ||||||||||||| ||||||||| |||||| |||||||||||||    
T  8481417 gttttatagatcagtcactctctacatttcataaagtttccgatgtggaacttctttctttt 8481356  T

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Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 327
Target Start/End: Complemental strand, 8428706 - 8428636
Alignment:
Q  258 gttttatagctcactcaatctctacatttcacaaagtttccaatgtgggacttctttctttt-ctttcaaa 327  Q
    ||||||||||||| ||| |||| | |||||||||||||| | ||||||||| |||||||||| ||||||||    
T  8428706 gttttatagctcagtcactctcaatatttcacaaagttttcgatgtgggacgtctttcttttgctttcaaa 8428636  T

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Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 327
Target Start/End: Original strand, 8450731 - 8450801
Alignment:
Q  258 gttttatagctcactcaatctctacatttcacaaagtttccaatgtgggacttctttctttt-ctttcaaa 327  Q
    ||||||||||||| ||| |||| | |||||||||||||| | ||||||||| |||||||||| ||||||||    
T  8450731 gttttatagctcagtcactctcaatatttcacaaagttttcgatgtgggacgtctttcttttgctttcaaa 8450801  T

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