View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1831_low_21 (Length: 376)
Name: NF1831_low_21
Description: NF1831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1831_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 34374612 - 34374255
Alignment:
| Q |
1 |
ccctgcaggggggcaagttgacgagcttgagttgtttacttcaatattatcatcttctttattttttgaatgtgtgacattgttgaggctgtcttgattt |
100 |
Q |
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| T |
34374612 |
ccctgcaggggggcaagttgacgagtttgagttgtttacttcaatattatcatcttctttattttttgaatgtgtgacattgttgaggctgtcttgattt |
34374513 |
T |
|
| Q |
101 |
gcatggatatatgttggtgatagagatatcttcaacattggacaataatcaatcttaaattccctcaaggatggatattctaactcaacagaatctgaac |
200 |
Q |
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| T |
34374512 |
gcatggatatatgttggtgatagagatatcttcaacattggacaatcatcaatcttaaattccctcaaggatggatattctaactcaacagaatctgaac |
34374413 |
T |
|
| Q |
201 |
aaatattcacaagctttggaagtccataaagagataaataacatagtttattaaacctaatagttgcggccacatctcctttaatagtatcatcctcttt |
300 |
Q |
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| T |
34374412 |
aaatattcacaagctttggaagtccagaaagagataaataacatagtttattaaacctaatagttgcggccacatctcctttaatagtatcatcctcttt |
34374313 |
T |
|
| Q |
301 |
accatctctgctgtaaactattatgttctcaatcattttacaagagcttacactcaat |
358 |
Q |
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| T |
34374312 |
accatctctgctgtaaactattatgttctcaatcattttacaagagcttactctcaat |
34374255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 222
Target Start/End: Original strand, 34289864 - 34289946
Alignment:
| Q |
140 |
ggacaataatcaatcttaaattccctcaaggatggatattctaactcaacagaatctgaacaaatattcacaagctttggaag |
222 |
Q |
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| T |
34289864 |
ggacaatcctcaatatcaaattgcttcaaggatggacattctaaccaaagtgaatctgaacaaatactcacaagctttggaag |
34289946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 165 - 265
Target Start/End: Original strand, 15893900 - 15894000
Alignment:
| Q |
165 |
tcaaggatggatattctaactcaacagaatctgaacaaatattcacaagctttggaagtccataaagagataaataacatagtttattaaacctaatagt |
264 |
Q |
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|||||||||||||||||||| || | |||||||||||| |||||||||||||||||| |||| ||||||||||| |||||||| || | |||||| |
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| T |
15893900 |
tcaaggatggatattctaaccaaagtaattctgaacaaatactcacaagctttggaagtcttgaaagtgataaataacaaagtttattgaaaccaatagt |
15893999 |
T |
|
| Q |
265 |
t |
265 |
Q |
| |
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| |
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| T |
15894000 |
t |
15894000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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