View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1831_low_22 (Length: 368)
Name: NF1831_low_22
Description: NF1831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1831_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 41559600 - 41559250
Alignment:
| Q |
1 |
gaatcatatttcatcattgacatcattttgatatcaatgaaatttgtgaaaacaacagaaggtctcagaattccaaaaaaccaatatgtactatcctttg |
100 |
Q |
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| T |
41559600 |
gaatcatatttcatcattgacattattttgatatcaatgaaatttgtgaaaacaacagaaggtctcagaattccaaaaaaccaatatgtactatcctttg |
41559501 |
T |
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| Q |
101 |
atgttcataacttttagatgcatcagggccagggattcacagtgtgagtggcgataatttgttttatgcaaatgtacacatcataaaatagtgcattttc |
200 |
Q |
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| T |
41559500 |
atgttcataacttttagatgcatcagggccagggattcacagtgtgagtggcgataatttgttttatgcaaatgtacacatcataaaatagtgcattttc |
41559401 |
T |
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| Q |
201 |
catgattgagtgtgatctcatcacgtacccattcccggcagaaacctac-nnnnnnnnnntgaaagtaacgacgaaacatggttaactttctatttgaaa |
299 |
Q |
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| T |
41559400 |
catgattgagtgtgatctcatcacgtacccattcccggcagaaacctacaaaaaaaaaaatgaaagtaacgacgaaacatggttaactttctatttgaaa |
41559301 |
T |
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| Q |
300 |
tgaatatacagcaagaaaaacatactgtaaaaatcagttgatgcttttatt |
350 |
Q |
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| T |
41559300 |
tgaatatacagcaagaaaaacatactgtaaaaatcagttgatgcttttatt |
41559250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 190 - 336
Target Start/End: Complemental strand, 41543268 - 41543121
Alignment:
| Q |
190 |
agtgcattttccatgattgagtgtgatctcatcacgtacccattcccggcagaaacctacnnnnnnnnnntg-aaagtaacgacgaaacatggttaactt |
288 |
Q |
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| T |
41543268 |
agtgcatattccatgattgagtgtgatctcatcaagtacccattcccggcagaaacctacaaaaagtaaaaggaaaataacgacgaaacatggttaactt |
41543169 |
T |
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| Q |
289 |
tctatttgaaatgaatatacagcaagaaaaacatactgtaaaaatcag |
336 |
Q |
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| T |
41543168 |
cctatttgaaatgaatattcagcaagagaaacatactataaaaatcag |
41543121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 103 - 192
Target Start/End: Complemental strand, 41543416 - 41543327
Alignment:
| Q |
103 |
gttcataacttttagatgcatcagggccagggattcacagtgtgagtggcgataatttgttttatgcaaatgtacacatcataaaatagt |
192 |
Q |
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| T |
41543416 |
gttcagaactcttagatgcatcagggccagggatttgcagcatcactggcgataatttgttttatacaaatgtacacatcataaaatagt |
41543327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 41543486 - 41543417
Alignment:
| Q |
1 |
gaatcatatttcatcattgacatcattttgatatcaatgaaatttgtgaaaacaacagaaggtctcagaa |
70 |
Q |
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| T |
41543486 |
gaatcatattttatcactgacatcattatgatatcaatgaagtttgtgaaaacaacagaaggtctcagaa |
41543417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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