View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1831_low_23 (Length: 358)
Name: NF1831_low_23
Description: NF1831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1831_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 8 - 346
Target Start/End: Complemental strand, 31135870 - 31135530
Alignment:
| Q |
8 |
ttatgagtttgtcatacctgttttttattgttattgtcttgcaatgtaatacacccatcattcaaccatttgattaggttttgtatttcttcttttttaa |
107 |
Q |
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| T |
31135870 |
ttatgagtttgtcatacctgttttttattgttattgtcttgcaatgcaatacacccatcattcaaccatttgattaggttttgtatttcttcttttttaa |
31135771 |
T |
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| Q |
108 |
tccaattggtaccaaagatttccttaataattcgagtgctctcctgaaagagggaaaagaaacacattag--nnnnnnnnnnnctttctgaaacacaata |
205 |
Q |
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| T |
31135770 |
tccaattggtaccaaagatttccttaataatttgagtgctctcctgaaagagggacaagaaacacattagtttttttcttcttctttctgaaacacaata |
31135671 |
T |
|
| Q |
206 |
ccaattaaagaatttattttttcggaatagaagctttgggcacttaatgacatgaaaacctggagtttaagctttgatatggttgaaatgaaaaaagctc |
305 |
Q |
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|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31135670 |
ccaattaaagaacttattttttcggaataaaagctttgggcacttaatgacatgaaaacctggagtttaagctcagatatggttgaaatgaaaaaagctc |
31135571 |
T |
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| Q |
306 |
cacaagctacttggaccaaccaactcttttcatctggtttc |
346 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |
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| T |
31135570 |
cacaagctacttcgaccaaccaactcttttcatctggtttc |
31135530 |
T |
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