View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1831_low_24 (Length: 356)
Name: NF1831_low_24
Description: NF1831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1831_low_24 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 11 - 356
Target Start/End: Original strand, 46465506 - 46465851
Alignment:
| Q |
11 |
cataggattgaccacgtcgtgatgctgaaaagacatatataatcatcattattgagctatgctatgttcacactcatttttcttacaccctagctatccc |
110 |
Q |
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| T |
46465506 |
cataggattgaccacgtcgtgatgctgaaaggacatatataatcatcattattgagctatgctatgttcacactcatttttcttacaccctagctatccc |
46465605 |
T |
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| Q |
111 |
tacattaccaaccacaggacccctcttcaccttgtttgttgtaccgtgaaatgcaagtaaagataataaaaatgagagcactagttattaatcagttttt |
210 |
Q |
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| T |
46465606 |
tacattaccaaccacaggacccctcttcaccttgtttgttgtaccgtgaaatgcaagtaaagataataaaaatgagagcactagttattaatcagttttt |
46465705 |
T |
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| Q |
211 |
aaaattaacaaagaataacaagtcactttggtcgtcaaaacatcgccaaatgtatattttgaatgtcaatttgatccttcaacacgtctttcattagtta |
310 |
Q |
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| T |
46465706 |
aaaattaacaaagaataacaagtcactttggtcgtcaaaacatcgccaaatgtatattttgaatgtcaatttgatccttcgacacgtctttcattagtta |
46465805 |
T |
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| Q |
311 |
atttgattctcaaatgtgtttttgattatactactaatagaagata |
356 |
Q |
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| T |
46465806 |
atttgattctcaaatgtgttttcaattatactactaataaaagata |
46465851 |
T |
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