View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1831_low_25 (Length: 354)
Name: NF1831_low_25
Description: NF1831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1831_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 20 - 351
Target Start/End: Original strand, 22831363 - 22831693
Alignment:
| Q |
20 |
acttagggatcatttttaacatatccccaaccttgagatctgtcactagcttttgacgactgtacttctataatctacgaaaaatgtgtcatgtgaagct |
119 |
Q |
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| T |
22831363 |
acttagggatcatttttaacatatccc-aaccttgagatctgtcactagcttttgacgacagtacttctataatctacgaaaaatgtgtcatgtgaagct |
22831461 |
T |
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| Q |
120 |
ttctccaaagcaactacagctggaacagcagcatctaaccatacaaaaacatggaattctgtagcttacaaaatagtaaatgttgagttagttctaaccc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
22831462 |
ttctccaaagcaactacagctggaacagcagcatctaaccatacaaaaacatggaattctgtagcatacaaaatagtaaatgttgagttagttctaaccc |
22831561 |
T |
|
| Q |
220 |
tcaaggaaaaggaaaacaaatcgaaaattgtgagaatataaataaaacgatacaggaaatcacaattgctaccttcagaactttgtcttgtctttttaca |
319 |
Q |
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| T |
22831562 |
tcaaggaaaaggaaaacaaatagaaaattgtgagaatataaataaaacgatgcaggaaatcacaattgctaccttcagaactttgtcttgtctttttaca |
22831661 |
T |
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| Q |
320 |
ttcattttctatatctaatcctttgttactgc |
351 |
Q |
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| T |
22831662 |
ttcattttctatatctaatcttttgttactgc |
22831693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 116 - 308
Target Start/End: Original strand, 22983654 - 22983847
Alignment:
| Q |
116 |
agctttctccaaagcaactacagctggaacagcagcatctaaccatacaaaaacatggaattctgtagcttacaaaatagtaaatgttgagttagttcta |
215 |
Q |
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| T |
22983654 |
agctttctccaaagcaactacagctggaacagctacatctaaccagacaaaaacatggaattctgtagcatgaaaaatggtaaatgttgagttagtttta |
22983753 |
T |
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| Q |
216 |
accctcaaggaaaaggaaaacaaatcga---aaattgtg-agaatataaataaaacgatacaggaaatcacaattgctaccttcagaactttgtctt |
308 |
Q |
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| T |
22983754 |
accctcaagcaaaaggaaaacaaaaaaaattaaattctgtagcatataaataaaacaaaac---aaatcacaattgctaccttcagaactgtgtctt |
22983847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 245 - 349
Target Start/End: Original strand, 22843847 - 22843950
Alignment:
| Q |
245 |
aattgtgagaatataaataaaacgatacaggaaatcacaattgctaccttcagaactttgtcttgtctttttacattcattttctatatctaatcctttg |
344 |
Q |
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| T |
22843847 |
aattgtgaggatataaataaaacgatactggaaatcataattgctacctacagaactttgtctt-tgtctttacattcatttgctatttctaaacttttg |
22843945 |
T |
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| Q |
345 |
ttact |
349 |
Q |
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||||| |
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| T |
22843946 |
ttact |
22843950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 120 - 284
Target Start/End: Complemental strand, 40945774 - 40945610
Alignment:
| Q |
120 |
ttctccaaagcaactacagctggaacagcagcatctaaccatacaaaa-acatggaattctgtagcttacaaaatagtaaatgttgagttagttctaacc |
218 |
Q |
| |
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||||||| ||| |||||||||||||||||| ||||| ||| |||||| || || |||||||||| | ||||| |||| || ||| | || ||||| |
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| T |
40945774 |
ttctccagagctactacagctggaacagcaacatctggccagacaaaagacttgcaattctgtagagtgaaaaatggtaa-tgctgaagtcattataacc |
40945676 |
T |
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| Q |
219 |
ctcaaggaaaaggaaaacaaatcgaaaattgtgagaatataaataaaacgatacaggaaatcacaa |
284 |
Q |
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|||||||||||||||||||||| ||| ||| ||||||||| |||||| | | ||| |||||||||| |
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| T |
40945675 |
ctcaaggaaaaggaaaacaaatggaagattatgagaatatgaataaacccacacaagaaatcacaa |
40945610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 108 - 265
Target Start/End: Complemental strand, 40958776 - 40958625
Alignment:
| Q |
108 |
tcatgtgaagctttctccaaagcaactacagctggaacagcagcatctaaccatacaaaa-acatggaattctgtagcttacaaaatagtaaatgttgag |
206 |
Q |
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||||| ||||||||||||| |||||||||||||||||||||| ||||| ||| |||||| | |||||||||| || | ||||| ||||||| |
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| T |
40958776 |
tcatgcgaagctttctccacagcaactacagctggaacagcaacatctggccagacaaaaggcttggaattctgcagagtgaaaaatggtaaatg----- |
40958682 |
T |
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| Q |
207 |
ttagttctaaccctcaaggaaaaggaaaacaaatcgaaaattgtgagaatataaataaa |
265 |
Q |
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| T |
40958681 |
--cattataacccttaaggaaaaggaaagcaaatagaagattatgagaatataaataaa |
40958625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 22507755 - 22507810
Alignment:
| Q |
100 |
aaaatgtgtcatgtgaagctttctccaaagcaactacagctggaacagcagcatct |
155 |
Q |
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| T |
22507755 |
aaaatgtatcatgtgaagctttctccagagcaactacagcttgaacagcaacatct |
22507810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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