View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1831_low_26 (Length: 343)
Name: NF1831_low_26
Description: NF1831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1831_low_26 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 20 - 343
Target Start/End: Complemental strand, 8353232 - 8352904
Alignment:
| Q |
20 |
atcagtaccaccgttctcccttaatacatgaaattgaaattgaaattgaggagttaagatcaaaaaggtactacaatatatacaagaatgcatgaaataa |
119 |
Q |
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| T |
8353232 |
atcagtaccaccgttctcccttaatacatgaaattgaaattgaa------gagttaagatcaaaaaggtactacaatatatacaagaatgcatgaaataa |
8353139 |
T |
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| Q |
120 |
aagatagatagttaccttcttttgaaggtgtatggggtaatcttgccggaagaatcatgagctgcccaaccagatacagtttgtgtgtggttaggagtag |
219 |
Q |
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| T |
8353138 |
ataaaagatagttaccttcttttgaaggtgtatggggtaatcttgccggaagaatcatgagctgcccaaccagatacagtttgtgtgtggttaggagtag |
8353039 |
T |
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| Q |
220 |
tcttagccattgatatga-----------atatgatgatagacagctaggttggtttggaattggattgagttaggaacttccacatttatagacaagat |
308 |
Q |
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| T |
8353038 |
tcttagccattgatatgatgcagacgcagagttagtgatagacagctaggttggtttggaattggattgaggtaggaacttccacatttatagacaagat |
8352939 |
T |
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| Q |
309 |
atggaacactgcacacagtaataaaatgtctgttt |
343 |
Q |
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| T |
8352938 |
atggaacactgcacacggtaataaaatgtctgttt |
8352904 |
T |
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