View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1831_low_27 (Length: 339)
Name: NF1831_low_27
Description: NF1831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1831_low_27 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 333
Target Start/End: Complemental strand, 32055537 - 32055225
Alignment:
| Q |
17 |
ataaacaatttcgccgcaactaatggatcgagataaattcacatttcactaaccttagttcctctgcttttcattaggatcccataaaaatttcaaaggg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32055537 |
ataaacaatttcgccgcaactaatggatcgagataaattcacgtttcactaaccttagttcctgtgcttttcattaggatcccataaaaatttcaaaggg |
32055438 |
T |
|
| Q |
117 |
aggttaagaaaaaccctttggaaaataatgaatgttattgtaatttgtttggattttcatgtaacatatataaggctgggacacttttaaatttgcatac |
216 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
32055437 |
aggttaagaaaaactctttggaaaataatg----ttattgtaatttgtttggattttcatgtaacatatataaggccgggacccttttaaatttgcatac |
32055342 |
T |
|
| Q |
217 |
acattgtgcgtcaagtggtcaagtattcattatcgtggattatctaatacaattttatcttgtattatcatgttttgtttgtatttactccaaaacgatc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
32055341 |
acattgtgcgtcaagtggtcaagtattcattaacgtggattatctaatacaattttattttgtattattatgttttgtttgtatttatcccaaaacgatc |
32055242 |
T |
|
| Q |
317 |
aatgtgtcttcatctca |
333 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
32055241 |
aatgtgtcttcttctca |
32055225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 300
Target Start/End: Complemental strand, 20996452 - 20996249
Alignment:
| Q |
83 |
cttttcattaggatcccataaaaatttcaaagggaggttaagaaaaaccctttggaaaataatgaatgttattgtaatttgtttggattttcatgtaaca |
182 |
Q |
| |
|
||||||||||| | |||||||||| | |||||||||||||||||||| ||||| || || || |||||||||||||||||| ||||| |||||||| |
|
|
| T |
20996452 |
cttttcattag-accccataaaaactggaaagggaggttaagaaaaacactttgtaagat----aacgttattgtaatttgtttgtatttttatgtaaca |
20996358 |
T |
|
| Q |
183 |
tatataaggctgggacacttttaaatttgcatacacattgtgcgtcaagtggtcaagtattcattatcgtggattatctaatacaattttatcttgtatt |
282 |
Q |
| |
|
||| |||| || |||| | ||| |||||| | | |||||| || || | |||||||||| ||||||||| ||||||||||||| || |||| |
|
|
| T |
20996357 |
tatctaagactaggactcctttgaatttgaaga-acattg-----ca---ggaaatgtattcattaatgtggattatgcaatacaattttatattttatt |
20996267 |
T |
|
| Q |
283 |
atcatgttttgtttgtat |
300 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
20996266 |
atcatgttttgtttgtat |
20996249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 83 - 282
Target Start/End: Complemental strand, 8086123 - 8085937
Alignment:
| Q |
83 |
cttttcattaggatcccataaaaatttcaaagggaggttaagaaaaaccctttggaaaataatgaatgttattgtaatttgtttggattttcatgtaaca |
182 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||| ||||||| || | |||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
8086123 |
cttttcattagga-cccataaaaatttgaaagggaggataagaaatacattctggaaaat----gatgttattctaatttgtttggattttcatgtaaca |
8086029 |
T |
|
| Q |
183 |
tatataaggctgggacacttttaaatttgcatacacattgtgcgtcaagtggtcaagtattcattatcgtggattatctaatacaattttatcttgtatt |
282 |
Q |
| |
|
||| |||| || ||| |||||||||||||||| |||||| || || || ||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
8086028 |
tatgtaagactaggatccttttaaatttgcatatacattg-----ca---tgtaaattattcattaatgtggattatctaatataattttatcttgtatt |
8085937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 84 - 222
Target Start/End: Original strand, 30333085 - 30333218
Alignment:
| Q |
84 |
ttttcattaggatcccataaaaatttcaaagggaggttaagaaaaaccctttggaaaataatgaatgttattgtaatttgtttggattttcatgtaacat |
183 |
Q |
| |
|
|||||||||||| ||| ||||||||| ||||||| ||||| |||||| |||| ||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30333085 |
ttttcattaggaccccttaaaaatttaaaagggaagttaa-aaaaacactttagaaaacgatg----ttattgtaatttgtttggattttcatgtaacat |
30333179 |
T |
|
| Q |
184 |
atataaggctgggacacttttaaatttgcatacacattg |
222 |
Q |
| |
|
|| |||| || |||| ||| |||||| ||||||||||| |
|
|
| T |
30333180 |
atttaagactaggacccttataaattatcatacacattg |
30333218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 7580976 - 7580925
Alignment:
| Q |
254 |
gattatctaatacaattttatcttgtattatcatgttttgtttgtatttact |
305 |
Q |
| |
|
||||||||||||| |||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
7580976 |
gattatctaatacgattttatcttatgttatcatgttttgtttgtatttact |
7580925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 26511347 - 26511427
Alignment:
| Q |
83 |
cttttcattaggatcccataaaaatttcaaagggaggttaagaaaaaccctttggaaaataatgaatgttattgtaatttgt |
164 |
Q |
| |
|
||||||||||||| |||||||||||| |||| ||||||||||||||| || |||| | |||| ||||||||||||||||| |
|
|
| T |
26511347 |
cttttcattaggacgccataaaaatttgaaagagaggttaagaaaaacactatggatgaaaatg-atgttattgtaatttgt |
26511427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 26511481 - 26511533
Alignment:
| Q |
251 |
gtggattatctaatacaattttatcttgtattatcatgttttgtttgtattta |
303 |
Q |
| |
|
||||||||| | || |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26511481 |
gtggattatattattcaattttatcttgtattatcatgttttggttgtattta |
26511533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 19828221 - 19828276
Alignment:
| Q |
240 |
tattcattatcgtggattatctaatac---aattttatcttgtattatcatgtttt |
292 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19828221 |
tattcattaatgtggattatctaatactacaattttatcttgtattatcatgtttt |
19828276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University