View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1831_low_29 (Length: 336)
Name: NF1831_low_29
Description: NF1831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1831_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 5 - 320
Target Start/End: Original strand, 45106159 - 45106472
Alignment:
| Q |
5 |
aatatatttattgttaaaactatttattataaaattttgtcattttaaacacaggtactggtgtcaaatcgtgaaagattcctgaaaataagttgatcaa |
104 |
Q |
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| T |
45106159 |
aatatatttatcgttaaaacgatctattataaaattttgtcattttaaagataagtagtggtgtcaaatcttgaaagattcctgaaaataagttgatcaa |
45106258 |
T |
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| Q |
105 |
cccctcaagttgctctatctaccctcaagttgctcaacccctgaaaataagttgatcacgagttaggttagactnnnnnnnntgatatggtcgaaactta |
204 |
Q |
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| T |
45106259 |
cccctcaagttgctctatctaccctcaagttgctcaacccctgaaaataagttgatcacgagttaggttagactaaaaaaaatgatatggtcgaaactta |
45106358 |
T |
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| Q |
205 |
tgatagatttatgcgatcgggagttatggcccgatacatgcaaaacgaacttttaaacaacttgagagacggataaagcagttgccatgacttggagtat |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| || ||||||||||||||||||| |
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| T |
45106359 |
tgatagatttatgcgatcgggagttatggcccgatacatgc--aacgaacttttaaacaacttgagagactgataaaacaattgccatgacttggagtat |
45106456 |
T |
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| Q |
305 |
ttgaaaactaacaaac |
320 |
Q |
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|||||||||||||||| |
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| T |
45106457 |
ttgaaaactaacaaac |
45106472 |
T |
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