View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1831_low_30 (Length: 336)
Name: NF1831_low_30
Description: NF1831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1831_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 8e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 10811901 - 10811581
Alignment:
| Q |
1 |
aggtgaacttttgtagtaattaattagcacagatttgcttaaatgttccctacttttgtagtaaaattacatatttatgtaatgaagtattgaatgtaat |
100 |
Q |
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| T |
10811901 |
aggtgaacttttgtagtaattaattagcacagatttgcttaaatgttccctacttttgaagtaaaattacatatttatgtaatgaagtaatgaatgtaat |
10811802 |
T |
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| Q |
101 |
atttaaccaaaatatatattagtgttattttggtgcta-------tacattggtaacnnnnnnnnnnnnnnnnngccaaaagctggttaacctcaatatt |
193 |
Q |
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| T |
10811801 |
atttaaacaaaat----attagtaatattttggtgctatattatatacattgataacttttttattttgtt---gccaaaagctggttcacctcaatatt |
10811709 |
T |
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| Q |
194 |
gtggctgtttgtgtttagcaaattgcacaactcaaataaattgaggtgttcaacattgtgtacaaa-ggaacttttcattttataagttctaccactatg |
292 |
Q |
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| T |
10811708 |
gtggctgtttgtgtttagcaaattgcacaactc-aataaattgaggtgttcaacaatgtgtacaaagggaaatttccattttatatgttctaccactatg |
10811610 |
T |
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| Q |
293 |
aaaacttggacatctaaactggtatattt |
321 |
Q |
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|||||||||||||||||| |||||||||| |
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| T |
10811609 |
aaaacttggacatctaaattggtatattt |
10811581 |
T |
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