View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1831_low_33 (Length: 319)
Name: NF1831_low_33
Description: NF1831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1831_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 41807326 - 41807026
Alignment:
| Q |
1 |
taagttgtgttcaaattatttccattacgtctattctaattaagctgtaaatatctttcactttgggcccttaagataaatggtttttctttttaatatt |
100 |
Q |
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| T |
41807326 |
taagttgtgttcaaattatttccattacgtctattctaattaagctgtaaatatctttcactttgggcccttaagataaatggtttttctttttaatatt |
41807227 |
T |
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| Q |
101 |
atgggatatcaaacaaggtcagctgtatttttataagatatacaaggaaatgaagnnnnnnnnntgtgtcagtaaaggaacagctaagctttctatgcaa |
200 |
Q |
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| T |
41807226 |
atgggatatcaaacaaagtcagctgtatttttataagatatacaaggaaatgaagaaaaaaaaatgtgtcagtaaaggaacagctaatctttctatgcaa |
41807127 |
T |
|
| Q |
201 |
ctgttattcattttcatagctgaacagattgaacaatgagttttactaaaaaatgacttaagctttgtaaatctcaatcacatttttgagctagatgact |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41807126 |
ctgttattcattttcatagctgaacagattgaacaatgagttttactaaaaaatggcttaagctttgtaaatctcaatcacatttttgagctagatgact |
41807027 |
T |
|
| Q |
301 |
t |
301 |
Q |
| |
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| |
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| T |
41807026 |
t |
41807026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 42031355 - 42031501
Alignment:
| Q |
1 |
taagttgtgttcaaattatttccattacgtctattctaattaagctgtaaatatctttcactttgggcccttaagataaatggtttttctttttaatatt |
100 |
Q |
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||||||||||||| |||||||||||||||| || ||| ||| || ||| ||||||||||||| || ||||||| ||| ||||| | |||||| |
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| T |
42031355 |
taagttgtgttcac-ttatttccattacgtcagttgtaagtaaactaaaaaactctttcactttggccc--taagatagatgattttt----taaatatt |
42031447 |
T |
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| Q |
101 |
atgggatatcaaacaaggtcagctgtatttttataagatatacaaggaaatgaa |
154 |
Q |
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| T |
42031448 |
atgggatatctaacaaggtcagttgtatttttataagatatacaaggaaatgaa |
42031501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 42031569 - 42031616
Alignment:
| Q |
189 |
ctttctatgcaactgttattcattttcatagctgaacagattgaacaa |
236 |
Q |
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|||||||| ||||||||||||| ||||||||||||||| ||||||||| |
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| T |
42031569 |
ctttctattcaactgttattcagtttcatagctgaacatattgaacaa |
42031616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 301
Target Start/End: Original strand, 42032394 - 42032431
Alignment:
| Q |
264 |
tttgtaaatctcaatcacatttttgagctagatgactt |
301 |
Q |
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| T |
42032394 |
tttgtaaatcttaatcacatttttgagctggatgactt |
42032431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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