View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1831_low_36 (Length: 308)
Name: NF1831_low_36
Description: NF1831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1831_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 25 - 237
Target Start/End: Complemental strand, 48754142 - 48753930
Alignment:
| Q |
25 |
aatgatcattcaatcttacgttattgtagggtctccattgttagacaacaacctggcgccgcgttcaacattgcccaaggtcgcggccagtgcaacagtc |
124 |
Q |
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| T |
48754142 |
aatgatcattcaatcttacgttattgtagggtctccattgttagacaacaacctggcgccgcgttcaatattgcccgaggtcgcggccagtgcaacagtc |
48754043 |
T |
|
| Q |
125 |
aggacagttacatttagtaacttcctcaagttcatcgagttcagccatgacagaagggtcatctatgttgtagttcgccggatagggaggatagacaggt |
224 |
Q |
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| T |
48754042 |
aggacagttacatttagtaacttcctcaagttcatcgagttcagccatgacagaagggtcatctatattgtagttggccggatagggaggatagacaggt |
48753943 |
T |
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| Q |
225 |
tgccttcatgtgc |
237 |
Q |
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||||||||||||| |
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| T |
48753942 |
tgccttcatgtgc |
48753930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 254 - 292
Target Start/End: Complemental strand, 48753910 - 48753872
Alignment:
| Q |
254 |
ggaataaggaatgtgcaaaatcgttcaatacttgtacat |
292 |
Q |
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| T |
48753910 |
ggaataaggaatgtgcaaaatcgttcaatacttgtacat |
48753872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 25 - 237
Target Start/End: Original strand, 52091534 - 52091746
Alignment:
| Q |
25 |
aatgatcattcaatcttacgttattgtagggtctccattgttagacaacaacctggcgccgcgttcaacattgcccaaggtcgcggccagtgcaacagtc |
124 |
Q |
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| T |
52091534 |
aatgatcattcaatcttacgttattgtagggtctccattagtagacaacaacctggcgccgcgttcaatattgcccgaggtcgcggccagtgcaacagtc |
52091633 |
T |
|
| Q |
125 |
aggacagttacatttagtaacttcctcaagttcatcgagttcagccatgacagaagggtcatctatgttgtagttcgccggatagggaggatagacaggt |
224 |
Q |
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||||||||||||||||| ||||||||||||||||| || |||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||| ||| |
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| T |
52091634 |
aggacagttacatttagaaacttcctcaagttcatggaattcagccacgacagaagggtcatccatgttgtagttcgccagatagggaggatagatagga |
52091733 |
T |
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| Q |
225 |
tgccttcatgtgc |
237 |
Q |
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| T |
52091734 |
tgccttcatgtgc |
52091746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 38462435 - 38462384
Alignment:
| Q |
25 |
aatgatcattcaatcttacgttattgtagggtctccattgttagacaacaac |
76 |
Q |
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|||||||||||| | |||| ||||| |||||||||| ||||||||||||||| |
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| T |
38462435 |
aatgatcattcagtgttaccttattatagggtctccgttgttagacaacaac |
38462384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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