View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1831_low_37 (Length: 303)

Name: NF1831_low_37
Description: NF1831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1831_low_37
NF1831_low_37
[»] chr7 (14 HSPs)
chr7 (1-287)||(2329743-2330029)
chr7 (1-287)||(2337642-2337928)
chr7 (1-287)||(2321245-2321531)
chr7 (1-287)||(1088703-1088989)
chr7 (1-287)||(1106052-1106338)
chr7 (1-287)||(1541291-1541577)
chr7 (1-287)||(1604439-1604725)
chr7 (2-287)||(1550525-1550810)
chr7 (1-287)||(1557235-1557521)
chr7 (1-287)||(1596109-1596395)
chr7 (1-288)||(3955282-3955569)
chr7 (107-287)||(3852661-3852841)
chr7 (1-127)||(9532037-9532162)
chr7 (5-119)||(30792362-30792477)
[»] scaffold0491 (2 HSPs)
scaffold0491 (1-287)||(941-1227)
scaffold0491 (1-287)||(5828-6114)
[»] chr8 (4 HSPs)
chr8 (1-287)||(18739062-18739348)
chr8 (1-287)||(18744026-18744312)
chr8 (1-287)||(18748987-18749273)
chr8 (1-287)||(18723335-18723621)
[»] chr1 (2 HSPs)
chr1 (1-127)||(19250460-19250585)
chr1 (1-126)||(41668777-41668902)
[»] chr5 (3 HSPs)
chr5 (1-126)||(36620662-36620787)
chr5 (10-126)||(8873023-8873139)
chr5 (1-38)||(39102305-39102342)
[»] chr4 (3 HSPs)
chr4 (1-126)||(42977703-42977828)
chr4 (10-41)||(54122984-54123015)
chr4 (1-126)||(48712362-48712487)
[»] chr3 (1 HSPs)
chr3 (1-126)||(31658074-31658199)
[»] chr6 (1 HSPs)
chr6 (13-126)||(1257880-1257993)


Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 2329743 - 2330029
Alignment:
Q  1 tatggattctgcttgcacaaaagaatcatgtttttaatctacgagtacatggagaaaggtagcttgttctctgtcttatatgatgaagttaaagccgtgg 100  Q
    |||||||||||  | |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||    
T  2329743 tatggattctgtctccacagaagaatcatgtttttgatctacgagtacatggagaaaggtagcttgttctctgtcttgtatgatgaaggtgaagccgtgg 2329842  T
Q  101 aattcaattggagaaaaaggcttaatgttgtgaaaggggttgcatttggtctatcatatcttcatcatgattgcacccctgccattgtgcatagagatgt 200  Q
    |||||||||||||||||||| |||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2329843 aattcaattggagaaaaagggttaatgttattaaaggtgttgcatttggtctatcatatcttcatcatgattgcacccctgccattgtgcatagagatgt 2329942  T
Q  201 atctactagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatc 287  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2329943 atctacgggcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatc 2330029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 2337642 - 2337928
Alignment:
Q  1 tatggattctgcttgcacaaaagaatcatgtttttaatctacgagtacatggagaaaggtagcttgttctctgtcttatatgatgaagttaaagccgtgg 100  Q
    |||||||||||  | |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||    
T  2337642 tatggattctgtctccacagaagaatcatgtttttgatctacgagtacatggagaaaggtagcttgttctctggcttgtatgatgaagttgaagccgtgg 2337741  T
Q  101 aattcaattggagaaaaaggcttaatgttgtgaaaggggttgcatttggtctatcatatcttcatcatgattgcacccctgccattgtgcatagagatgt 200  Q
    |||||||||||||||||||| |||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2337742 aattcaattggagaaaaagggttaatgttattaaaggtgttgcatttggtctatcatatcttcatcatgattgcacccctgccattgtgcatagagatgt 2337841  T
Q  201 atctactagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatc 287  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2337842 atctactggcaatatcttgctaaactcggagtggaagcctagtgtttctgactttggcacatctcgaatccttcaatatgattcatc 2337928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 2321245 - 2321531
Alignment:
Q  1 tatggattctgcttgcacaaaagaatcatgtttttaatctacgagtacatggagaaaggtagcttgttctctgtcttatatgatgaagttaaagccgtgg 100  Q
    |||||||| |||||||||||||||||||||||||| |||||| | |||||||||| ||| || |||||||| ||||| |||||||| |   | ||| |||    
T  2321245 tatggattttgcttgcacaaaagaatcatgtttttgatctaccattacatggagagaggaagtttgttctccgtcttgtatgatgatgcagaggccatgg 2321344  T
Q  101 aattcaattggagaaaaaggcttaatgttgtgaaaggggttgcatttggtctatcatatcttcatcatgattgcacccctgccattgtgcatagagatgt 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||| | || ||||| ||||||||    
T  2321345 aattcaattggagaaaaaggcttaatgttgttaaaggggttgcctttggcctatcatatcttcatcatgattgtacccctccaatagtgcacagagatgt 2321444  T
Q  201 atctactagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatc 287  Q
    |||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  2321445 atctaccagcaatatcttgctaaactctgagtggcatcctagtgtttctgactttggaacagctcgactccttcaatatgattcatc 2321531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 1088703 - 1088989
Alignment:
Q  1 tatggattctgcttgcacaaaagaatcatgtttttaatctacgagtacatggagaaaggtagcttgttctctgtcttatatgatgaagttaaagccgtgg 100  Q
    ||||||||||||||||||||||||||||||||||| |||||  | |||||||||||||| ||||||||||||||||| |||||||| ||  |||| ||||    
T  1088703 tatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgtagaagctgtgg 1088802  T
Q  101 aattcaattggagaaaaaggcttaatgttgtgaaaggggttgcatttggtctatcatatcttcatcatgattgcacccctgccattgtgcatagagatgt 200  Q
    |||||||||||||||||||| ||||   ||| ||||| |||||||||| |||||| |||||||||| |||||||||| || | || |||||| |||||||    
T  1088803 aattcaattggagaaaaagggttaacactgttaaaggagttgcatttgctctatcttatcttcatcctgattgcaccgctccaatagtgcatcgagatgt 1088902  T
Q  201 atctactagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatc 287  Q
    |||||||||||||||||||||||||||||||||| || | |||||  | |||||||||||| |||||||||||||||||||||||||    
T  1088903 atctactagcaatatcttgctaaactctgagtggcaggccagtgtcgcggactttggcacagctcgactccttcaatatgattcatc 1088989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 1106052 - 1106338
Alignment:
Q  1 tatggattctgcttgcacaaaagaatcatgtttttaatctacgagtacatggagaaaggtagcttgttctctgtcttatatgatgaagttaaagccgtgg 100  Q
    ||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||| ||| |||||||| |||| |||||||| ||  |||||||||    
T  1106052 tatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctatcttgtatgatgatgtagaagccgtgg 1106151  T
Q  101 aattcaattggagaaaaaggcttaatgttgtgaaaggggttgcatttggtctatcatatcttcatcatgattgcacccctgccattgtgcatagagatgt 200  Q
    ||||||||||||||| |||| ||||   | | ||||| |||||||||| ||| |||||||||||||||||||||||  || | || ||||||||||||||    
T  1106152 aattcaattggagaacaagggttaacactattaaaggagttgcatttgctctttcatatcttcatcatgattgcactgctccaatcgtgcatagagatgt 1106251  T
Q  201 atctactagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatc 287  Q
    ||||| |||||||||||||||||||||||||||| || | |||||  |||||||||||||| |||||||||||||||||||||||||    
T  1106252 atctagtagcaatatcttgctaaactctgagtggcaggccagtgtcgctgactttggcacagctcgactccttcaatatgattcatc 1106338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 1541577 - 1541291
Alignment:
Q  1 tatggattctgcttgcacaaaagaatcatgtttttaatctacgagtacatggagaaaggtagcttgttctctgtcttatatgatgaagttaaagccgtgg 100  Q
    |||||||| |||||||||||||||||||||||||| |||||  | |||||||||| ||| ||||| ||||||||||| |||||||| ||  |||||||||    
T  1541577 tatggattttgcttgcacaaaagaatcatgtttttgatctatcaatacatggagagaggaagcttattctctgtcttgtatgatgatgtagaagccgtgg 1541478  T
Q  101 aattcaattggagaaaaaggcttaatgttgtgaaaggggttgcatttggtctatcatatcttcatcatgattgcacccctgccattgtgcatagagatgt 200  Q
    ||||||| ||||| |||||| | ||   ||| ||||| |||||||||| ||| |||||||||||||||||||||||  || | || |||||| |||||||    
T  1541477 aattcaagtggaggaaaagggtcaacactgttaaaggagttgcatttgctctttcatatcttcatcatgattgcactgctccaatagtgcattgagatgt 1541378  T
Q  201 atctactagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatc 287  Q
    |||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  1541377 atctactagcaatatcttgctaaactctgagtggcaggctagtgtgtctgactttggcacagctcgactccttcaatatgattcatc 1541291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 1604439 - 1604725
Alignment:
Q  1 tatggattctgcttgcacaaaagaatcatgtttttaatctacgagtacatggagaaaggtagcttgttctctgtcttatatgatgaagttaaagccgtgg 100  Q
    ||||||||||||||||||||||||||||||||||| |||||  | |||||||||||||| ||||||||||||||||| |||||||| ||  |||||||||    
T  1604439 tatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgtagaagccgtgg 1604538  T
Q  101 aattcaattggagaaaaaggcttaatgttgtgaaaggggttgcatttggtctatcatatcttcatcatgattgcacccctgccattgtgcatagagatgt 200  Q
    ||||||| |||||||||||| ||||   | | ||||| |||||||||| ||| |||||||||||||||||||||||  || | ||  |||||||||||||    
T  1604539 aattcaagtggagaaaaagggttaacactattaaaggagttgcatttgctctttcatatcttcatcatgattgcactgctccaatcatgcatagagatgt 1604638  T
Q  201 atctactagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatc 287  Q
    ||||| ||||||||| |||||||||| ||||||| || ||||||||| ||||||||||||| ||||||||||||||||| |||||||    
T  1604639 atctagtagcaatatattgctaaactatgagtggcaggctagtgtttgtgactttggcacagctcgactccttcaatataattcatc 1604725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 2 - 287
Target Start/End: Complemental strand, 1550810 - 1550525
Alignment:
Q  2 atggattctgcttgcacaaaagaatcatgtttttaatctacgagtacatggagaaaggtagcttgttctctgtcttatatgatgaagttaaagccgtgga 101  Q
    ||||||||||||||||||| |||||||||||||| |||||  |||||||||||| ||| ||||||||| ||||||| ||||| || ||  |||| |||||    
T  1550810 atggattctgcttgcacaagagaatcatgtttttgatctatcagtacatggagagaggaagcttgttcactgtcttgtatgacgatgtagaagctgtgga 1550711  T
Q  102 attcaattggagaaaaaggcttaatgttgtgaaaggggttgcatttggtctatcatatcttcatcatgattgcacccctgccattgtgcatagagatgta 201  Q
    ||||||||||||||||||| |||    ||| |||||  ||||||||| ||| |||||||||||||||||||| ||  || | || |||||||||||||||    
T  1550710 attcaattggagaaaaaggattagcactgttaaaggaattgcatttgctctttcatatcttcatcatgattgtactgctccaatagtgcatagagatgta 1550611  T
Q  202 tctactagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatc 287  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||||||||||||||||    
T  1550610 tctactagcaatatcttgctaaactctgagtggaaggctagtgtctctgactttggcacagctcgattccttcaatatgattcatc 1550525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 1557521 - 1557235
Alignment:
Q  1 tatggattctgcttgcacaaaagaatcatgtttttaatctacgagtacatggagaaaggtagcttgttctctgtcttatatgatgaagttaaagccgtgg 100  Q
    ||||||||||||||||||||||||||||||||||| || ||  | |||||||||||||| ||||||||||||||||| |||||||| ||  |||| ||||    
T  1557521 tatggattctgcttgcacaaaagaatcatgtttttgatatatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgtggaagctgtgg 1557422  T
Q  101 aattcaattggagaaaaaggcttaatgttgtgaaaggggttgcatttggtctatcatatcttcatcatgattgcacccctgccattgtgcatagagatgt 200  Q
    |||||||||||||||||||| ||||   ||| ||||| |||||||||| |||||| |||||||||||||||||||   || | || ||||||||||||||    
T  1557421 aattcaattggagaaaaagggttaacactgttaaaggagttgcatttgctctatcttatcttcatcatgattgcaatgctccaatagtgcatagagatgt 1557322  T
Q  201 atctactagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatc 287  Q
    ||||| ||||||||| ||  | |||||||||||| || ||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  1557321 atctagtagcaatatatttgttaactctgagtggcaggctagtgtttgtgactttggcacagctcgactccttcaatatgattcatc 1557235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 1596109 - 1596395
Alignment:
Q  1 tatggattctgcttgcacaaaagaatcatgtttttaatctacgagtacatggagaaaggtagcttgttctctgtcttatatgatgaagttaaagccgtgg 100  Q
    ||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||| ||| ||||||||||||| |||||||| ||  |||||||||    
T  1596109 tatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctgtcttgtatgatgatgtagaagccgtgg 1596208  T
Q  101 aattcaattggagaaaaaggcttaatgttgtgaaaggggttgcatttggtctatcatatcttcatcatgattgcacccctgccattgtgcatagagatgt 200  Q
    ||||||| ||||||| |||| ||||   ||| |||||  ||||||||| ||| ||||||||||||||||| |||||  || | || ||||||||||||||    
T  1596209 aattcaagtggagaacaagggttaacactgttaaaggaattgcatttgctctttcatatcttcatcatgaatgcactactccaatagtgcatagagatgt 1596308  T
Q  201 atctactagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatc 287  Q
    ||||| |||||||||||| ||||||||||| ||| |  ||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  1596309 atctagtagcaatatcttactaaactctgaatggcatgctagtgtttgtgactttggcacatcccgactccttcaatatgattcatc 1596395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 3955569 - 3955282
Alignment:
Q  1 tatggattctgcttgcacaaaagaatcatgtttttaatctacgagtacatggagaaaggtagcttgttctctgtcttatatgatgaagttaaagccgtgg 100  Q
    |||||||| || ||||| |||||| | |||||||| |||||  |||| ||||| ||||| ||||||||||| |||||  ||||||| ||  ||||| |      
T  3955569 tatggattttgtttgcataaaagagttatgtttttgatctatcagtatatggaaaaaggaagcttgttctccgtcttgcatgatgatgtcgaagccataa 3955470  T
Q  101 aattcaattggagaaaaaggcttaatgttgtgaaaggggttgcatttggtctatcatatcttcatcatgattgcacccctgccattgtgcatagagatgt 200  Q
    ||||| ||||||| |||||| ||||     | ||||| ||||||| || ||||||||||||||||||||||| |||| || | || ||||||||||||||    
T  3955469 aattcgattggaggaaaagggttaacaccattaaaggagttgcatctgctctatcatatcttcatcatgatttcacctctccaatagtgcatagagatgt 3955370  T
Q  201 atctactagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatct 288  Q
    ||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  3955369 atctactagcaatatcttgctaaactcagaatggcagcctagtgtttctgactttggcatagctcgactccttcaatatgattcatct 3955282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 107 - 287
Target Start/End: Original strand, 3852661 - 3852841
Alignment:
Q  107 attggagaaaaaggcttaatgttgtgaaaggggttgcatttggtctatcatatcttcatcatgattgcacccctgccattgtgcatagagatgtatctac 206  Q
    |||||||||||||| ||||  |||| ||||| ||||||| || ||||||||||||||||||||||| ||||  | | || ||||||||||||||||||||    
T  3852661 attggagaaaaaggattaacattgttaaaggagttgcatctgctctatcatatcttcatcatgatttcacctttccaatagtgcatagagatgtatctac 3852760  T
Q  207 tagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatc 287  Q
    |||||||||||| |||||||| || ||| |||||||||||||||||||||| | | ||||||||||||||| |||||||||    
T  3852761 tagcaatatctttctaaactcggaatggcagcctagtgtttctgactttggtatagctcgactccttcaatgtgattcatc 3852841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 9532162 - 9532037
Alignment:
Q  1 tatggattctgcttgcacaaaagaatcatgtttttaatctacgagtacatggagaaaggtagcttgttctctgtcttatatgatgaagttaaagccgtgg 100  Q
    |||||||| || ||| ||||||||||||||||||| |||||  | ||| || ||||||| || ||||||||  | || |||||||| ||  |||  ||||    
T  9532162 tatggattatgattgtacaaaagaatcatgtttttgatctatcaatacgtg-agaaaggaagtttgttctcgtttttgtatgatgatgtagaagttgtgg 9532064  T
Q  101 aattcaattggagaaaaaggcttaatg 127  Q
    ||||||||||||||||||| |||||||    
T  9532063 aattcaattggagaaaaagacttaatg 9532037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 119
Target Start/End: Original strand, 30792362 - 30792477
Alignment:
Q  5 gattctgcttgcacaaaa-gaatcatgtttttaatctacgagtacatggagaaaggtagcttgttctctgtcttatatgatgaagttaaagccgtggaat 103  Q
    |||||||||||||||||| ||||| ||||||| |||||  | ||| | |||||| | |||| ||||| ||| || |||||||| ||  |||  ||| |||    
T  30792362 gattctgcttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaaagaagctagttctttgttttgtatgatgatgtagaagttgtgaaat 30792461  T
Q  104 tcaattggagaaaaag 119  Q
    ||||||||||||||||    
T  30792462 tcaattggagaaaaag 30792477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 1227 - 941
Alignment:
Q  1 tatggattctgcttgcacaaaagaatcatgtttttaatctacgagtacatggagaaaggtagcttgttctctgtcttatatgatgaagttaaagccgtgg 100  Q
    ||||||||||||||||||||||||||||||||||| |||||  | |||||||||||||| ||||||||||||||||| |||||||| || |||| |||||    
T  1227 tatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgtaaaagtcgtgg 1128  T
Q  101 aattcaattggagaaaaaggcttaatgttgtgaaaggggttgcatttggtctatcatatcttcatcatgattgcacccctgccattgtgcatagagatgt 200  Q
    ||||||| ||||| |||||| ||||   | | ||||| |||||||||| | | |||||||||||||||||||||||  || | || |||||| |||||||    
T  1127 aattcaagtggaggaaaagggttaacactattaaaggagttgcatttgctttttcatatcttcatcatgattgcactgctccaatagtgcatcgagatgt 1028  T
Q  201 atctactagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatc 287  Q
    |||||||||||||||||||||||||||||||||| || | ||||||| |||||| |||| | |||| ||||||||||||||||||||    
T  1027 atctactagcaatatcttgctaaactctgagtggcaggccagtgtttgtgacttcggcatagctcggctccttcaatatgattcatc 941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 6114 - 5828
Alignment:
Q  1 tatggattctgcttgcacaaaagaatcatgtttttaatctacgagtacatggagaaaggtagcttgttctctgtcttatatgatgaagttaaagccgtgg 100  Q
    ||||| ||||||||||||||||||||||||||||| |||||  | |||||||| | ||| ||||| ||||||||||| |||||||| ||  ||||| ||     
T  6114 tatggtttctgcttgcacaaaagaatcatgtttttgatctatcaatacatggatagaggaagcttattctctgtcttgtatgatgatgtagaagccctgc 6015  T
Q  101 aattcaattggagaaaaaggcttaatgttgtgaaaggggttgcatttggtctatcatatcttcatcatgattgcacccctgccattgtgcatagagatgt 200  Q
    ||||||| |||||||||||  ||||   | | ||||| |||||||||| ||| |||||||||||||||||||||||  || | || |||||| |||||||    
T  6014 aattcaagtggagaaaaagagttaacactattaaaggagttgcatttgctctttcatatcttcatcatgattgcactgctccaatagtgcatcgagatgt 5915  T
Q  201 atctactagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatc 287  Q
    |||||||||||||||||||||||||||||||||| || | ||||||| |||||| |||||| |||||||||||||||||||||||||    
T  5914 atctactagcaatatcttgctaaactctgagtggcaggccagtgtttgtgacttcggcacagctcgactccttcaatatgattcatc 5828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 18739348 - 18739062
Alignment:
Q  1 tatggattctgcttgcacaaaagaatcatgtttttaatctacgagtacatggagaaaggtagcttgttctctgtcttatatgatgaagttaaagccgtgg 100  Q
    ||||||||||||||||||||||||||||||||||| |||||  | |||||||||||||| ||||||||||||||||| |||||||| || |||| |||||    
T  18739348 tatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgtaaaagtcgtgg 18739249  T
Q  101 aattcaattggagaaaaaggcttaatgttgtgaaaggggttgcatttggtctatcatatcttcatcatgattgcacccctgccattgtgcatagagatgt 200  Q
    ||||||| ||||| |||||| ||||   | | ||||| |||||||||| | | |||||||||||||||||||||||  || | || |||||| |||||||    
T  18739248 aattcaagtggaggaaaagggttaacactattaaaggagttgcatttgctttttcatatcttcatcatgattgcactgctccaatagtgcatcgagatgt 18739149  T
Q  201 atctactagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatc 287  Q
    |||||||||||||||||||||||||||||||||| || | ||||||| |||||| |||| | |||| ||||||||||||||||||||    
T  18739148 atctactagcaatatcttgctaaactctgagtggcaggccagtgtttgtgacttcggcatagctcggctccttcaatatgattcatc 18739062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 18744312 - 18744026
Alignment:
Q  1 tatggattctgcttgcacaaaagaatcatgtttttaatctacgagtacatggagaaaggtagcttgttctctgtcttatatgatgaagttaaagccgtgg 100  Q
    ||||||||||||||||||||||||||||||||||| |||||  | |||||||||||||| ||||||||||||||||| |||||||| || |||| |||||    
T  18744312 tatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgtaaaagtcgtgg 18744213  T
Q  101 aattcaattggagaaaaaggcttaatgttgtgaaaggggttgcatttggtctatcatatcttcatcatgattgcacccctgccattgtgcatagagatgt 200  Q
    ||||||| ||||| |||||| ||||   | | ||||| |||||||||| | | |||||||||||||||||||||||  || | || |||||| |||||||    
T  18744212 aattcaagtggaggaaaagggttaacactattaaaggagttgcatttgctttttcatatcttcatcatgattgcactgctccaatagtgcatcgagatgt 18744113  T
Q  201 atctactagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatc 287  Q
    |||||||||||||||||||||||||||||||||| || | ||||||| |||||| |||| | |||| ||||||||||||||||||||    
T  18744112 atctactagcaatatcttgctaaactctgagtggcaggccagtgtttgtgacttcggcatagctcggctccttcaatatgattcatc 18744026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 18749273 - 18748987
Alignment:
Q  1 tatggattctgcttgcacaaaagaatcatgtttttaatctacgagtacatggagaaaggtagcttgttctctgtcttatatgatgaagttaaagccgtgg 100  Q
    ||||||||||||||||||||||||||||||||||| |||||  | |||||||| | ||| ||||| ||||||||||| |||||||| ||  ||||| |||    
T  18749273 tatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggatagaggaagcttattctctgtcttgtatgatgatgtagaagccatgg 18749174  T
Q  101 aattcaattggagaaaaaggcttaatgttgtgaaaggggttgcatttggtctatcatatcttcatcatgattgcacccctgccattgtgcatagagatgt 200  Q
    ||||||| |||||||||||  ||||   | | ||||| |||||||||| ||| |||||||||||||||||||||||  || | || |||||| |||||||    
T  18749173 aattcaagtggagaaaaagagttaacactattaaaggagttgcatttgctctttcatatcttcatcatgattgcactgctccaatagtgcatcgagatgt 18749074  T
Q  201 atctactagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatc 287  Q
    |||||||||||||||||||||||||||||||||| || | ||||||| |||||| |||||| |||||||||||||||||||||||||    
T  18749073 atctactagcaatatcttgctaaactctgagtggcaggccagtgtttgtgacttcggcacagctcgactccttcaatatgattcatc 18748987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 18723621 - 18723335
Alignment:
Q  1 tatggattctgcttgcacaaaagaatcatgtttttaatctacgagtacatggagaaaggtagcttgttctctgtcttatatgatgaagttaaagccgtgg 100  Q
    ||||||||||||||||||||||||||||||||||| |||||  | |||||||| | ||| ||||| ||||||||||| |||||||| ||  ||||| ||     
T  18723621 tatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggatagaggaagcttattctctgtcttgtatgatgatgtagaagccatga 18723522  T
Q  101 aattcaattggagaaaaaggcttaatgttgtgaaaggggttgcatttggtctatcatatcttcatcatgattgcacccctgccattgtgcatagagatgt 200  Q
    ||||||| |||||||||||  ||||   | | ||||| |||||||||| ||| |||||||||||||||||||||||  || | || |||||| |||||||    
T  18723521 aattcaagtggagaaaaagagttaacactattaaaggagttgcatttgctctttcatatcttcatcatgattgcactgctccaatagtgcatcgagatgt 18723422  T
Q  201 atctactagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatc 287  Q
    |||||||||||||||||||||||||||||||||| || | ||||||| |||||| |||||| |||||||||||||||||||||||||    
T  18723421 atctactagcaatatcttgctaaactctgagtggcaggccagtgtttgtgacttcggcacagctcgactccttcaatatgattcatc 18723335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 19250460 - 19250585
Alignment:
Q  1 tatggattctgcttgcacaaaagaatcatgtttttaatctacgagtacatggagaaaggtagcttgttctctgtcttatatgatgaagttaaagccgtgg 100  Q
    ||||||||||||||||||||||||||||||||||| |||||  | ||||| || ||| | ||||||||||| || || |||||||| ||  |||  ||||    
T  19250460 tatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacat-gaaaaatgaagcttgttctcggttttgtatgatgatgtagaagttgtgg 19250558  T
Q  101 aattcaattggagaaaaaggcttaatg 127  Q
    ||||||||||||||||||| |||||||    
T  19250559 aattcaattggagaaaaagacttaatg 19250585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 41668902 - 41668777
Alignment:
Q  1 tatggattctgcttgcacaaaagaatcatgtttttaatcta-cgagtacatggagaaaggtagcttgttctctgtcttatatgatgaagttaaagccgtg 99  Q
    |||||||| ||||||||||||||||| |||||||||||||| ||| |||||| | ||||  || |||||||| || || ||||| ||  |  |||| |||    
T  41668902 tatggattttgcttgcacaaaagaataatgtttttaatctatcga-tacatgaaaaaagaaagtttgttctcagttttgtatgaggatttagaagctgtg 41668804  T
Q  100 gaattcaattggagaaaaaggcttaat 126  Q
    ||||||||||| |||||||| ||||||    
T  41668803 gaattcaattgcagaaaaagacttaat 41668777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 36620662 - 36620787
Alignment:
Q  1 tatggattctgcttgcacaaaagaatcatgtttttaatctacgagtacatggagaaaggtagcttgttctctgtcttatatgatgaagttaaagccgtgg 100  Q
    |||||||| ||||||||||||||||||||||||||||||||  | |||||| | | ||  || |||||||| || || ||||| ||  |  |||| ||||    
T  36620662 tatggattttgcttgcacaaaagaatcatgtttttaatctatcaatacatgaaaagagaaagtttgttctcggttttgtatgaggatttagaagctgtgg 36620761  T
Q  101 aattcaattggagaaaaaggcttaat 126  Q
    |||||||||| |||||||| ||||||    
T  36620762 aattcaattgcagaaaaagacttaat 36620787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 126
Target Start/End: Complemental strand, 8873139 - 8873023
Alignment:
Q  10 tgcttgcacaaaagaatcatgtttttaatctacgagtacatggagaaaggtagcttgttctctgtcttatatgatgaagttaaagccgtggaattcaatt 109  Q
    ||||||||||||||||||||||||||||||||  | |||||| | ||||  || ||||||||  | || ||||| ||  |  |||  |||||||||||||    
T  8873139 tgcttgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaagaaagtttgttctcgattttgtatgaggatttagaagatgtggaattcaatt 8873040  T
Q  110 ggagaaaaaggcttaat 126  Q
    | |||||||| ||||||    
T  8873039 gcagaaaaagacttaat 8873023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 39102342 - 39102305
Alignment:
Q  1 tatggattctgcttgcacaaaagaatcatgtttttaat 38  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  39102342 tatggattttgcttgcacaaaagaagcatgtttttaat 39102305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 42977828 - 42977703
Alignment:
Q  1 tatggattctgcttgcacaaaagaatcatgtttttaatctacgagtacatggagaaaggtagcttgttctctgtcttatatgatgaagttaaagccgtgg 100  Q
    |||||||| ||||||||||||||||||||||||||||||||  | |||||| | ||||  || |||||||| || || ||||| ||  |  |||| ||||    
T  42977828 tatggattttgcttgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaagaaagtttgttctcggttttgtatgaggatttagaagctgtgg 42977729  T
Q  101 aattcaattggagaaaaaggcttaat 126  Q
    |||| ||||| |||||||| ||||||    
T  42977728 aatttaattgcagaaaaagacttaat 42977703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 41
Target Start/End: Original strand, 54122984 - 54123015
Alignment:
Q  10 tgcttgcacaaaagaatcatgtttttaatcta 41  Q
    ||||||||||||||||||||||||||||||||    
T  54122984 tgcttgcacaaaagaatcatgtttttaatcta 54123015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 48712487 - 48712362
Alignment:
Q  1 tatggattctgcttgcacaaaagaatcatgtttttaatctacgagtacatggagaaaggtagcttgttctctgtcttatatgatgaagttaaagccgtgg 100  Q
    |||||||| |||||||||||||||||||| |||| ||||||  | |||||| | ||||  || ||||||||  | || ||||| ||  |  |||  ||||    
T  48712487 tatggattttgcttgcacaaaagaatcatattttcaatctatcaatacatgaaaaaagaaagtttgttctcgattttgtatgaggatttagaagttgtgg 48712388  T
Q  101 aattcaattggagaaaaaggcttaat 126  Q
    |||||||||| |||||||| ||||||    
T  48712387 aattcaattgcagaaaaagacttaat 48712362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 31658074 - 31658199
Alignment:
Q  1 tatggattctgcttgcacaaaagaatcatgtttttaatctacgagtacatggagaaaggtagcttgttctctgtcttatatgatgaagttaaagccgtgg 100  Q
    |||||||| ||||||||||||||||||||||||||||||||  | |||||| | ||||  || |||||||| || |||||||| ||  |  |||| || |    
T  31658074 tatggattttgcttgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaagaaagtttgttctcggttttatatgaggatttagaagctgtag 31658173  T
Q  101 aattcaattggagaaaaaggcttaat 126  Q
    |||| ||||| |||||||| ||||||    
T  31658174 aatttaattgcagaaaaagacttaat 31658199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 1257880 - 1257993
Alignment:
Q  13 ttgcacaaaagaatcatgtttttaatctacgagtacatggagaaaggtagcttgttctctgtcttatatgatgaagttaaagccgtggaattcaattgga 112  Q
    |||||||||||||||||||||||||||||  | |||||| | ||||  || |||||||| || || ||||| ||  |  |||| | |||||||||||| |    
T  1257880 ttgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaagaaagtttgttctcggttttgtatgaggatttagaagctgaggaattcaattgca 1257979  T
Q  113 gaaaaaggcttaat 126  Q
    ||||| | ||||||    
T  1257980 gaaaaggacttaat 1257993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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