View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1831_low_38 (Length: 294)
Name: NF1831_low_38
Description: NF1831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1831_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 5603580 - 5603828
Alignment:
| Q |
18 |
attaatgtgatttttaattcatctttagttattcttttggaagnnnnnnnnttaaaacattttgtgttttatggatgcaagttgtcttggtcattcattt |
117 |
Q |
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| T |
5603580 |
attaatgtgatttttaattcatgtttagttattcttttggaagaaaaaaaaaaaaaacattttgtgttttatggatgcaagttgtcttggtcattcattt |
5603679 |
T |
|
| Q |
118 |
gatagtaattttgatacctcctactattataaagttagtttgatattgaataaactacagattctgttcactctgctgtaataccccaaaacaagatatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5603680 |
aatagtaattttgatacctcctactattataaagttagtttgataatgaataaactacatattctgttcactctgctgtaataccccaaaacaagatatt |
5603779 |
T |
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| Q |
218 |
catgataatttaataagaacggtaatgaaatataattaaagaataatct |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5603780 |
catgataatttaataagaacggtaatgaaatataattaaagaataatct |
5603828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 5631790 - 5631542
Alignment:
| Q |
18 |
attaatgtgatttttaattcatctttagttattcttttggaagnnnnnnnnttaaaacattttgtgttttatggatgcaagttgtcttggtcattcattt |
117 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5631790 |
attaatgtgatttttaattcatgtttagttattcttttggaagaaaaaaaaaaaaaacattttgtgttttatggatgcaagttgtcttggtcattcattt |
5631691 |
T |
|
| Q |
118 |
gatagtaattttgatacctcctactattataaagttagtttgatattgaataaactacagattctgttcactctgctgtaataccccaaaacaagatatt |
217 |
Q |
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| T |
5631690 |
aatagtaattttgatacctcctactattataaagttagtttgataatgaataaactacatattctgttcactctgctgtaataccccaaaacaagatatt |
5631591 |
T |
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| Q |
218 |
catgataatttaataagaacggtaatgaaatataattaaagaataatct |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5631590 |
catgataatttaataagaacggtaatgaaatataattaaagaataatct |
5631542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 70 - 266
Target Start/End: Complemental strand, 5649299 - 5649103
Alignment:
| Q |
70 |
taaaacattttgtgttttatggatgcaagttgtcttggtcattcatttgatagtaattttgatacctcctactattataaagttagtttgatattgaata |
169 |
Q |
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||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5649299 |
taaaacattttttgtttgatggatgcaagttgtctttgtcattcatttgatagtaattttgatacctcctactattataaagttagtttgataatgaata |
5649200 |
T |
|
| Q |
170 |
aactacagattctgttcactctgctgtaataccccaaaacaagatattcatgataatttaataagaacggtaatgaaatataattaaagaataatct |
266 |
Q |
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||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||| |||||||| |
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| T |
5649199 |
aactacatattctggtcactctgctgtaataccccaaaacaagatattcatgataatttaataagaatggtaatgaaatatattaaaaaaataatct |
5649103 |
T |
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