View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1831_low_44 (Length: 274)
Name: NF1831_low_44
Description: NF1831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1831_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 3 - 202
Target Start/End: Original strand, 6915311 - 6915510
Alignment:
| Q |
3 |
ttcctaccattcatctctgctttgcacacaaattgccaagacataatagccaaccgggctcttcaacgaactttgtaatgaaggcattcaaagcttatta |
102 |
Q |
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| T |
6915311 |
ttcctaccattcatctctgctttgcacacaaattgccaagacataatagccaaccgggctcttcaacgaactttgtaatgaaggcattcaaagcttatta |
6915410 |
T |
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| Q |
103 |
caagcttcgccttggatgcaccaacaagcgtcgtttgagtgctaagctcaagagggctgctgctgaggcagaaaaggaggacaagattacttgacatccc |
202 |
Q |
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| T |
6915411 |
caagcttcgccttggatgcaccaacaagcgtcgtttgggtgctaggctcaagagggctgctgctgaggcagaaaaggaggacaagattacttgacatccc |
6915510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 79 - 188
Target Start/End: Original strand, 6902717 - 6902823
Alignment:
| Q |
79 |
aatgaaggcattcaaagcttattacaagcttcgccttggatgcaccaacaagcgtcgtttgagtgctaagctcaagagggctgctgctgaggcagaaaag |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||| ||||||| |||| | |||| |||||||||| |||||||||||||||||| |
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| T |
6902717 |
aatgaaggcattcaaagcttattacaagcttcgccttgaacgcaccaataagcgtcatttgggagctaggctcaagagg---gctgctgaggcagaaaag |
6902813 |
T |
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| Q |
179 |
gaggacaaga |
188 |
Q |
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| T |
6902814 |
gaagacaaga |
6902823 |
T |
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