View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1831_low_47 (Length: 254)

Name: NF1831_low_47
Description: NF1831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1831_low_47
NF1831_low_47
[»] chr1 (2 HSPs)
chr1 (17-254)||(5607988-5608225)
chr1 (72-210)||(17368787-17368925)
[»] chr2 (2 HSPs)
chr2 (17-254)||(87024-87261)
chr2 (17-254)||(39829210-39829447)
[»] chr6 (4 HSPs)
chr6 (17-254)||(15607234-15607471)
chr6 (17-249)||(19365217-19365445)
chr6 (29-136)||(11732938-11733046)
chr6 (175-248)||(11733043-11733116)
[»] chr4 (9 HSPs)
chr4 (17-250)||(51260809-51261042)
chr4 (17-218)||(3611795-3611996)
chr4 (21-254)||(55733677-55733910)
chr4 (29-254)||(28424866-28425087)
chr4 (17-254)||(3607125-3607362)
chr4 (28-196)||(49950039-49950207)
chr4 (20-238)||(28539071-28539289)
chr4 (21-184)||(56062739-56062902)
chr4 (28-80)||(26423456-26423508)
[»] chr8 (2 HSPs)
chr8 (28-254)||(7125890-7126116)
chr8 (17-254)||(43319295-43319530)
[»] chr5 (3 HSPs)
chr5 (18-254)||(20203627-20203863)
chr5 (30-126)||(6776549-6776645)
chr5 (30-126)||(17490426-17490522)
[»] chr7 (1 HSPs)
chr7 (17-254)||(24251371-24251602)


Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 5608225 - 5607988
Alignment:
Q  17 cagagattcaagtttagacagaaagctccatccttgcttagataccatagcgatattaaaagctttgaaattcctaaatcccatgccaccaaactcttta 116  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5608225 cagagattcaagtttagacagaaagctccatccttgcttagctaccatagcgatattaaaagctttgaaattcataaatcccatgccaccaaactcttta 5608126  T
Q  117 gggcatgccatacgttcccatgccatccatttaatccctcggttgttaccccttcctccccaccaaaacgcattgatcatcttttcaatatcatctataa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5608125 gggcatgccatacgttcccatgccatccatttaatccctcggttgttactccttcctccccaccaaaacgcattgatcatcttttcaatatcatctataa 5608026  T
Q  217 ctcaacttggcagaagataaatgctccttatgtatgaa 254  Q
    || |||| |||| ||||||||||||| |||||||||||    
T  5608025 ctgaactcggcataagataaatgctcattatgtatgaa 5607988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 210
Target Start/End: Complemental strand, 17368925 - 17368787
Alignment:
Q  72 ttaaaagctttgaaattcctaaatcccatgccaccaaactctttagggcatgccatacgttcccatgccatccatttaatccctcggttgttaccccttc 171  Q
    |||||||||||||||||||| || ||||| ||||||||||| || ||||||||||  | |||||| | |||||| || || |||||  | ||||| |  |    
T  17368925 ttaaaagctttgaaattcctgaagcccatcccaccaaactccttcgggcatgccactctttcccacgacatccacttgattcctcgactattaccgccgc 17368826  T
Q  172 ctccccaccaaaacgcattgatcatcttttcaatatcat 210  Q
    | ||||||||||| ||||| ||||| || ||||| ||||    
T  17368825 caccccaccaaaatgcattaatcattttctcaatgtcat 17368787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 87261 - 87024
Alignment:
Q  17 cagagattcaagtttagacagaaagctccatccttgcttagataccatagcgatattaaaagctttgaaattcctaaatcccatgccaccaaactcttta 116  Q
    |||||||||| || |||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||     
T  87261 cagagattcaggtgtagacaaaaggctccatccttgcttagctaccatagcgatattaaaagctttgaaattcctaaaccccattccaccaaactctttg 87162  T
Q  117 gggcatgccatacgttcccatgccatccatttaatccctcggttgttaccccttcctccccaccaaaacgcattgatcatcttttcaatatcatctataa 216  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||| ||||||||||||||||    
T  87161 gggcatgccatatgttcccatgccatccatttaatccctcggttgttactccttcctccccaccaaaacgcattaaccatcttctcaatatcatctataa 87062  T
Q  217 ctcaacttggcagaagataaatgctccttatgtatgaa 254  Q
    || |||| |||||||||||||| ||| |||||||||||    
T  87061 ctgaactcggcagaagataaatactcattatgtatgaa 87024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 39829210 - 39829447
Alignment:
Q  17 cagagattcaagtttagacagaaagctccatccttgcttagataccatagcgatattaaaagctttgaaattcctaaatcccatgccaccaaactcttta 116  Q
    |||||| ||| ||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||| ||| | ||| ||||||||||||||     
T  39829210 cagagaatcaggtttagacagaaaactccatccttgcttagctaccatagcaatattaaaagctttgaaattccgaaacctcattccaccaaactctttg 39829309  T
Q  117 gggcatgccatacgttcccatgccatccatttaatccctcggttgttaccccttcctccccaccaaaacgcattgatcatcttttcaatatcatctataa 216  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39829310 gggcatgccacacgttcccaagccatccatttaatccctcggttgttactccttcctccccaccaaaacgcattgatcatcttctcaatatcatctataa 39829409  T
Q  217 ctcaacttggcagaagataaatgctccttatgtatgaa 254  Q
    || || | |||| ||||||||||||| |||| ||||||    
T  39829410 ctgaattcggcaaaagataaatgctcattatatatgaa 39829447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 158; Significance: 4e-84; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 15607234 - 15607471
Alignment:
Q  17 cagagattcaagtttagacagaaagctccatccttgcttagataccatagcgatattaaaagctttgaaattcctaaatcccatgccaccaaactcttta 116  Q
    |||||||| ||||||||||||||||||||| |||| ||||| |||||||| |||||||||||||||||||||   ||||||||| |||||||| ||||||    
T  15607234 cagagattaaagtttagacagaaagctccaccctttcttagctaccatagagatattaaaagctttgaaattttgaaatcccattccaccaaattcttta 15607333  T
Q  117 gggcatgccatacgttcccatgccatccatttaatccctcggttgttaccccttcctccccaccaaaacgcattgatcatcttttcaatatcatctataa 216  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15607334 gggcatgccacgcgttcccatgccatccatttaatccctcggttgttactccttcctccccaccaaaacgcattgatcatcttctcaatatcatctataa 15607433  T
Q  217 ctcaacttggcagaagataaatgctccttatgtatgaa 254  Q
     | || | |||||||||||||| ||| |||||||||||    
T  15607434 ttgaattcggcagaagataaatactcattatgtatgaa 15607471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 19365217 - 19365445
Alignment:
Q  17 cagagattcaagtttagacagaaagctccatccttgcttagataccatagcgatattaaaagctttgaaattcctaaatcccatgccaccaaactcttta 116  Q
    |||||||||| |||||||||||||  |||| | |||||||| ||||||||| |||||||||||||||||||||||||| ||||| |||||||| |||||     
T  19365217 cagagattcaggtttagacagaaaattccaccattgcttagctaccatagcaatattaaaagctttgaaattcctaaaccccattccaccaaattctttg 19365316  T
Q  117 gggcatgccatacgttcccatgccatccatttaatccctcggttgttaccccttcctccccaccaaaacgcattgatcatcttttcaatatcatctataa 216  Q
    |||||||||| | |||||||||||||||||||||||     |||||||| ||||||||||||||||||| |||||||||| || ||||||||||||||||    
T  19365317 gggcatgccacatgttcccatgccatccatttaatca----gttgttactccttcctccccaccaaaacccattgatcatattctcaatatcatctataa 19365412  T
Q  217 ctcaacttggcagaagataaatgctccttatgt 249  Q
    || || | |||||||||||||| ||| ||||||    
T  19365413 ctgaattcggcagaagataaatactcattatgt 19365445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 11732938 - 11733046
Alignment:
Q  29 tttagacagaaagctccatcctt-gcttagataccatagcgatattaaaagctttgaaattcctaaatcccatgccaccaaactctttagggcatgccat 127  Q
    ||||||||||||  | ||||||| || ||| ||||||||| |||||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||     
T  11732938 tttagacagaaaatttcatcctttgcctagctaccatagcaatattaaaagctttgaaattcctaaaccccattccaccaaattctttggggcatgccac 11733037  T
Q  128 acgttccca 136  Q
    | |||||||    
T  11733038 atgttccca 11733046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 175 - 248
Target Start/End: Original strand, 11733043 - 11733116
Alignment:
Q  175 cccaccaaaacgcattgatcatcttttcaatatcatctataactcaacttggcagaagataaatgctccttatg 248  Q
    ||||||||||| ||||||||||||| |||||||||||||||||| || | ||||| |||||||| ||| |||||    
T  11733043 cccaccaaaacacattgatcatcttctcaatatcatctataactgaattcggcagcagataaatactcattatg 11733116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 51260809 - 51261042
Alignment:
Q  17 cagagattcaagtttagacagaaagctccatccttgcttagataccatagcgatattaaaagctttgaaattcctaaatcccatgccaccaaactcttta 116  Q
    |||||||||| ||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| ||| ||||| |||||||| |||||     
T  51260809 cagagattcaggtttagacagaaagctcaatccttgcttagctaccatagcgagattaaaagctttgaaattccgaaaccccattccaccaaattctttg 51260908  T
Q  117 gggcatgccatacgttcccatgccatccatttaatccctcggttgttaccccttcctccccaccaaaacgcattgatcatcttttcaatatcatctataa 216  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||| ||||||||||||| ||    
T  51260909 gggcatgccatgcattcccatgccatccatttaatccctcggttgttactccttcctccccaccaaaatgcattaatcatcttctcaatatcatctagaa 51261008  T
Q  217 ctcaacttggcagaagataaatgctccttatgta 250  Q
     | || | |||||||||||||| ||| |||||||    
T  51261009 ttgaattcggcagaagataaatactcattatgta 51261042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 3611795 - 3611996
Alignment:
Q  17 cagagattcaagtttagacagaaagctccatccttgcttagataccatagcgatattaaaagctttgaaattcctaaatcccatgccaccaaactcttta 116  Q
    |||||||||| ||||||| ||||| |||||||||||||||| |||||||| || |||||||||||||||||||| ||| ||||| || ||||||| |||     
T  3611795 cagagattcaggtttagaaagaaaactccatccttgcttagctaccatagtgagattaaaagctttgaaattccgaaaccccattcccccaaactgtttg 3611894  T
Q  117 gggcatgccatacgttcccatgccatccatttaatccctcggttgttaccccttcctccccaccaaaacgcattgatcatcttttcaatatcatctataa 216  Q
    |||||||||| ||||||||| |||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3611895 gggcatgccacacgttcccaagccatctatttaatccttcggttgttactccttcctccccaccaaaacgcattgatcatcttctcaatatcatctataa 3611994  T
Q  217 ct 218  Q
    ||    
T  3611995 ct 3611996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 21 - 254
Target Start/End: Complemental strand, 55733910 - 55733677
Alignment:
Q  21 gattcaagtttagacagaaagctccatccttgcttagataccatagcgatattaaaagctttgaaattcctaaatcccatgccaccaaactctttagggc 120  Q
    |||||| ||||||||| ||| ||||||||||| |||| |||||||||||  |||||||||||||||||| |||| ||||| |||||||| |||||  |||    
T  55733910 gattcaggtttagacataaaactccatccttgtttagctaccatagcgaggttaaaagctttgaaattcttaaaccccattccaccaaattctttgaggc 55733811  T
Q  121 atgccatacgttcccatgccatccatttaatccctcggttgttaccccttcctccccaccaaaacgcattgatcatcttttcaatatcatctataactca 220  Q
    |||  ||| |||||| |||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |    
T  55733810 atgatatatgttcccgtgccatccatttaatcacacggttgttactccttcctccccaccaaaacgcattgatcatcttctcaatatcatctataactga 55733711  T
Q  221 acttggcagaagataaatgctccttatgtatgaa 254  Q
    | | ||||| |||||||| ||| |||||||||||    
T  55733710 attcggcagtagataaatactcattatgtatgaa 55733677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 29 - 254
Target Start/End: Complemental strand, 28425087 - 28424866
Alignment:
Q  29 tttagacagaaagctccatccttgcttagataccatagcgatattaaaagctttgaaattcctaaatcccatgccaccaaactctttagggcatgccata 128  Q
    |||||||||||| |||||||||||||||| ||||||| | |||||||||||||||||||||| ||| ||||| |||||||||||| | |||||||||| |    
T  28425087 tttagacagaaaactccatccttgcttagctaccataacaatattaaaagctttgaaattccaaaaccccattccaccaaactctctggggcatgccaca 28424988  T
Q  129 cgttcccatgccatccatttaatccctcggttgttaccccttcctccccaccaaaacgcattgatcatcttttcaatatcatctataactcaacttggca 228  Q
    |||||||| |||||||||||||||||||    |||||  ||||||||||||||||| ||| |||||||||| |||||||||||||||||| || | ||||    
T  28424987 cgttcccaagccatccatttaatccctc----gttacttcttcctccccaccaaaatgcaatgatcatcttctcaatatcatctataactgaattcggca 28424892  T
Q  229 gaagataaatgctccttatgtatgaa 254  Q
     ||||||||||||| |||| ||||||    
T  28424891 aaagataaatgctcattatatatgaa 28424866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 3607125 - 3607362
Alignment:
Q  17 cagagattcaagtttagacagaaagctccatccttgcttagataccatagcgatattaaaagctttgaaattcctaaatcccatgccaccaaactcttta 116  Q
    |||||||||| ||||||||||||| |||||||||||||||| |||||||| || ||||||||||| ||| ||   ||| ||| | || |||||||||||     
T  3607125 cagagattcaggtttagacagaaaactccatccttgcttagctaccatagtgagattaaaagcttcgaagttttgaaaccccgttcccccaaactctttg 3607224  T
Q  117 gggcatgccatacgttcccatgccatccatttaatccctcggttgttaccccttcctccccaccaaaacgcattgatcatcttttcaatatcatctataa 216  Q
    ||||||||||  |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||  ||||||||||| |||||| |||||||||    
T  3607225 gggcatgccacgcgttcccaagccatccatttaatccttcggttgttactccttcctccccaccaaaacgtgttgatcatcttctcaataccatctataa 3607324  T
Q  217 ctcaacttggcagaagataaatgctccttatgtatgaa 254  Q
    || || | |||||||| ||||| ||| |||||||||||    
T  3607325 ctgaattcggcagaaggtaaatactcattatgtatgaa 3607362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 28 - 196
Target Start/End: Complemental strand, 49950207 - 49950039
Alignment:
Q  28 gtttagacagaaagctccatccttgcttagataccatagcgatattaaaagctttgaaattcctaaatcccatgccaccaaactctttagggcatgccat 127  Q
    ||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||| | ||| |||||||| ||||| ||||||||||     
T  49950207 gtttagacagaaaactccatccttgcttagctaccatagcgagattaaaagctttgaaattcctaaacctcattccaccaaattctttggggcatgccac 49950108  T
Q  128 acgttcccatgccatccatttaatccctcggttgttaccccttcctccccaccaaaacgcattgatcat 196  Q
    |||||||||||||||||||||| |||| |||||||||| |||||||||||||||||| |||||||||||    
T  49950107 acgttcccatgccatccatttattcccgcggttgttactccttcctccccaccaaaatgcattgatcat 49950039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 28539071 - 28539289
Alignment:
Q  20 agattcaagtttagacagaaagctccatccttgcttagataccatagcgatattaaaagctttgaaattcctaaatcccatgccaccaaactctttaggg 119  Q
    ||||||| ||||||||| ||| |||||| ||||||||| ||||||| ||| |||||||||||||||||||||||| ||||| |||||||| ||||| |||    
T  28539071 agattcaggtttagacataaaactccattcttgcttagctaccataacgagattaaaagctttgaaattcctaaaccccataccaccaaattctttgggg 28539170  T
Q  120 catgccatacgttcccatgccatccatttaatccctcggttgttaccccttcctccccaccaaaacgcattgatcatcttttcaatatcatctataactc 219  Q
     ||||||  |||||||||||||||||||||||||| || ||||||| ||||| ||||||||||||| |||  ||||| || ||||||||||||||||||     
T  28539171 aatgccacgcgttcccatgccatccatttaatcccacgattgttactccttcatccccaccaaaacacatctatcattttctcaatatcatctataacta 28539270  T
Q  220 aacttggcagaagataaat 238  Q
    || | |||| |||||||||    
T  28539271 aattcggcataagataaat 28539289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 21 - 184
Target Start/End: Complemental strand, 56062902 - 56062739
Alignment:
Q  21 gattcaagtttagacagaaagctccatccttgcttagataccatagcgatattaaaagctttgaaattcctaaatcccatgccaccaaactctttagggc 120  Q
    |||||| |||||||||||||||||||||||||||| | ||||||||||  |||||||||||||||||||| ||| ||||| |||||||| ||||| ||||    
T  56062902 gattcaggtttagacagaaagctccatccttgcttcgctaccatagcgggattaaaagctttgaaattccgaaaccccattccaccaaattctttggggc 56062803  T
Q  121 atgccatacgttcccatgccatccatttaatccctcggttgttaccccttcctccccaccaaaa 184  Q
    ||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||| ||||    
T  56062802 atgccatgcgttcccatgccatccatttaatccctcggttgttacttcttcctccccactaaaa 56062739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 26423456 - 26423508
Alignment:
Q  28 gtttagacagaaagctccatccttgcttagataccatagcgatattaaaagct 80  Q
    ||||||||||||| | |||||||||||||  ||||||||| | ||||||||||    
T  26423456 gtttagacagaaaaccccatccttgcttaactaccatagcaagattaaaagct 26423508  T

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Target: chr8 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 28 - 254
Target Start/End: Complemental strand, 7126116 - 7125890
Alignment:
Q  28 gtttagacagaaagctccatccttgcttagataccatagcgatattaaaagctttgaaattcctaaatcccatgccaccaaactctttagggcatgccat 127  Q
    ||||||||||||| |||||||||||||||| ||||||||| | |||||||||||||||||| | ||| ||||| |||||||||||||| ||||||||||     
T  7126116 gtttagacagaaaactccatccttgcttagctaccatagcaagattaaaagctttgaaatttcgaaaccccattccaccaaactctttggggcatgccac 7126017  T
Q  128 acgttcccatgccatccatttaatccctcggttgttaccccttcctccccaccaaaacgcattgatcatcttttcaatatcatctataactcaacttggc 227  Q
    ||||||||| || ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||| || | | |    
T  7126016 acgttcccaagctatccatttaatccctcgattgttactccttcctccccaccaaaacgcattgatcatcttctcaatatcatctattactgaattcgtc 7125917  T
Q  228 agaagataaatgctccttatgtatgaa 254  Q
    | ||||||||| ||| |||| ||||||    
T  7125916 aaaagataaatactcattatatatgaa 7125890  T

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Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 43319295 - 43319530
Alignment:
Q  17 cagagattcaagtttagacagaaagctccatccttgcttagataccatagcgatattaaaagctttgaaattcctaaatcccatgccaccaaactcttta 116  Q
    |||||||||| ||||||||| ||| |||||||||||||| | ||||||||||| |||||||||||||||||| | ||| ||||| ||||||||||||||     
T  43319295 cagagattcaggtttagacaaaaaactccatccttgcttggctaccatagcgagattaaaagctttgaaatttcgaaaccccattccaccaaactctttg 43319394  T
Q  117 ggg-catgccatacgttcccatgccatccatttaatccctcggttgttaccccttcctccccaccaaaacgcattgatcatcttttcaatatcatctata 215  Q
    ||| |||||||  |||||||| ||||||||||||||||||||||| |||| |||   |||||||||||| |||||||||||||| |||||||||||||||    
T  43319395 gggccatgccactcgttcccaagccatccatttaatccctcggttattactcct---tccccaccaaaatgcattgatcatcttctcaatatcatctata 43319491  T
Q  216 actcaacttggcagaagataaatgctccttatgtatgaa 254  Q
    ||| || | |||||||| ||||| ||| |||| ||||||    
T  43319492 actgaattcggcagaaggtaaatactcattatatatgaa 43319530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 20203863 - 20203627
Alignment:
Q  18 agagattcaagtttagacagaaagctccatccttgcttagataccatagcgatattaaaagctttgaaattcctaaatcccatgccaccaaactctttag 117  Q
    ||||||||| ||||||| ||||| ||||| |||| ||||| |||||| || | |||||||||||||||||||||||| ||||| |||||||| | ||| |    
T  20203863 agagattcaggtttagatagaaaactccacccttacttagctaccatggctagattaaaagctttgaaattcctaaaccccattccaccaaattgtttgg 20203764  T
Q  118 ggcatgccatacgttcccatgccatccatttaatccctcggttgttaccccttcctccccaccaaaacgcattgatcatcttttcaatatcatctataac 217  Q
    ||||||||| ||||||||||||||||||||||||||| | |||||||| | |||||||||| |||||| ||||||||||||| |||||||||||||||||    
T  20203763 ggcatgccacacgttcccatgccatccatttaatcccgcagttgttactctttcctccccatcaaaacacattgatcatcttctcaatatcatctataac 20203664  T
Q  218 tcaacttggcagaagataaatgctccttatgtatgaa 254  Q
    | || |  ||||||||||||| ||| |||||||||||    
T  20203663 tgaattcagcagaagataaatactcattatgtatgaa 20203627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 126
Target Start/End: Original strand, 6776549 - 6776645
Alignment:
Q  30 ttagacagaaagctccatccttgcttagataccatagcgatattaaaagctttgaaattcctaaatcccatgccaccaaactctttagggcatgcca 126  Q
    |||||||||||  | ||||| ||||||| ||||||| | |  |||||||| ||||| |||| ||| ||||| ||||||||||| |||||| ||||||    
T  6776549 ttagacagaaaatttcatccctgcttagctaccatatcaaggttaaaagccttgaagttccgaaaccccattccaccaaactccttagggaatgcca 6776645  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 126
Target Start/End: Complemental strand, 17490522 - 17490426
Alignment:
Q  30 ttagacagaaagctccatccttgcttagataccatagcgatattaaaagctttgaaattcctaaatcccatgccaccaaactctttagggcatgcca 126  Q
    |||||||||||  ||||||| | ||||| ||||||| | |  |||||||||||||| |||| ||| ||||| ||||||||||  |||||| ||||||    
T  17490522 ttagacagaaaattccatccctacttagctaccatatcaaggttaaaagctttgaagttccgaaaccccattccaccaaactgcttagggaatgcca 17490426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 24251602 - 24251371
Alignment:
Q  17 cagagattcaagtttagacagaaagctccatccttgcttagataccatagcgatattaaaagctttgaaattcctaaatcccatgccaccaaactcttta 116  Q
    |||||| ||| |||||||  | || |||||||||||||||| ||||||||||| |||||||||||||||||||| ||| ||||| ||||||||||||||     
T  24251602 cagagaatcaggtttagatgggaaactccatccttgcttagctaccatagcgagattaaaagctttgaaattccaaaaccccattccaccaaactctttt 24251503  T
Q  117 gggcatgccatacgttcccatgccatccatttaatccctcggttgttaccccttcctccccaccaaaacgcattgatcatcttttcaatatcatctataa 216  Q
    |||||||||| ||||||| | |||||| |||||| |||||||||||||| ||||      ||||||||||||||||||||||| |||||||||| |||||    
T  24251502 gggcatgccacacgttcctaagccatctatttaacccctcggttgttactcctt------caccaaaacgcattgatcatcttctcaatatcatttataa 24251409  T
Q  217 ctcaacttggcagaagataaatgctccttatgtatgaa 254  Q
    || || | |||| ||||||||||||| |||| ||||||    
T  24251408 ctaaattcggcaaaagataaatgctcattatatatgaa 24251371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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