View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1831_low_5 (Length: 666)

Name: NF1831_low_5
Description: NF1831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1831_low_5
NF1831_low_5
[»] chr1 (1 HSPs)
chr1 (20-651)||(45706847-45707471)


Alignment Details
Target: chr1 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 20 - 651
Target Start/End: Complemental strand, 45707471 - 45706847
Alignment:
Q  20 cggaggaggatactttcaaattctcataagatcgcttgacttgcaccgaaatccatctaagtgacatgaaaaagtacacaacggtttactgataactgga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45707471 cggaggaggatactttcaaattctcataagatcgcttgacttgcaccgaaatccatctaagtgacatgaaaaagtacacaacggtttactgataactgga 45707372  T
Q  120 gacaattcgtaacaaatagtcacaaatgcattaattagaaactcacagcgaaatcataactaacaacaaaacatttgatttgcctcacttagcaaggact 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45707371 gacaattcgtaacaaatagtcacaaatgcattaattagaaactcacagcgaaatcataactaacaacaaaacatttgatttgcctcacttagcaaggact 45707272  T
Q  220 tcagtcttcaggtaattcacatatccatgtattcgagaataaaatttaattgcacagtgagggaaaaagtaaagcacacatcaccttaatatcatttcta 319  Q
    ||||       ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  45707271 tcag-------gtaattcacatatccatgtattcgagaataaaatttaattgcatagtgagggaaaaagtaaagcacacatcaccttaatatcatttcta 45707179  T
Q  320 attttattttaagctcacttagttgtttaatcatttagttcattaattactttcaatgggatttgataattagctttgccccggacaaaataggcaatta 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45707178 attttattttaagctcacttagttgtttaatcatttagttcattaattactttcaatgggatttgataattagctttgccccggacaaaataggcaatta 45707079  T
Q  420 aactgtccccgctcgtcctgcaaacacgatgtctatgatttcagatcgatatcgctcacccccttaccttggcatgcttgactggcaaaatccttggttc 519  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45707078 aactgtccctgctcgtcctgcaaacactatgtctatgatttcagatcgatatcgctcacccccttaccttggcatgcttgactggcaaaatccttggttc 45706979  T
Q  520 ctttgactcgctcctcccaccacggctttgtttcttcataactactaacatgtctataaatcataaacaattgtcactttaagtcttaaacataatttat 619  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  45706978 ctttgactggctcctcccaccacggctttgtttcttcataactactaacatgtctataaatcataaacatttgtcactttaagtctaaaacataatttat 45706879  T
Q  620 aattatatgctagaacaatacatttgattttt 651  Q
    ||||||||||||||||||||||||||||||||    
T  45706878 aattatatgctagaacaatacatttgattttt 45706847  T

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