View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1831_low_53 (Length: 234)
Name: NF1831_low_53
Description: NF1831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1831_low_53 |
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Alignment Details
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 22957451 - 22957523
Alignment:
| Q |
1 |
acttcataaatctcatgatagtttaagtcacaacacagtccaggttagcaaaatatgttctacaagttctacc |
73 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
22957451 |
acttcataaatctcatgatagtttaagtcacaacacagtctaggttagcaaaatatgtactacaagttctacc |
22957523 |
T |
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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 143 - 214
Target Start/End: Original strand, 22957593 - 22957664
Alignment:
| Q |
143 |
ttagagccagtctaaactattgagtcatttatatatgtgcaaaaacgagttaaacatttaaaaattgtaaag |
214 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
22957593 |
ttagagccagtataaactattgagtcatttatatatgtgcaaaaacgagttaaacacttgaaaattgtaaag |
22957664 |
T |
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