View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1831_low_8 (Length: 586)
Name: NF1831_low_8
Description: NF1831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1831_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 39488290 - 39488616
Alignment:
| Q |
1 |
tgttagtttctgtgaagaaaatcacatatgtttctgtacatgcatcatgccttgattgtgttattcttttgctggtaacatgaaggtgcggctgaaaaat |
100 |
Q |
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| T |
39488290 |
tgttagtttctgtgaagaaaatcacatatgtttctgtacatgcatcatgccttgattgtgttattattttgctcgtaacatgaaggtgcggctgaaaaa- |
39488388 |
T |
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| Q |
101 |
gagaaaagctgtcatctaatctgaatagttaacactgatattgaataaaacttctatttgcttcttcatatactttt-aannnnnnnnaatagctaaatt |
199 |
Q |
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| T |
39488389 |
------------catataatctgaatagttaacactgatattgaataaaacttctatttgcttcttcatatactttttaattttttttaatagctaaatt |
39488476 |
T |
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| Q |
200 |
aattgacaaattttattgacatcccaaagcaaatgacttagaaaacatactcctgcaaattcctaatacagaacaacagcaatcagccttgaaacaagtc |
299 |
Q |
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| T |
39488477 |
aattgacaaattttattgacatcccaaagcaaatgacttagaaaacatactcctgcaaattcctaatacagaacaacagcaatcagccttgaaacaagtc |
39488576 |
T |
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| Q |
300 |
gaaaaaacactatcagaacctaaaaactgaaggcattgcg |
339 |
Q |
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| T |
39488577 |
gaaaaaactctatcagaacctaaaaactgaaggcattgcg |
39488616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 402 - 569
Target Start/End: Original strand, 39488736 - 39488903
Alignment:
| Q |
402 |
ttgaagatccagtcattttgtgctttccataacacccacataataatgtaaaaaattaacatcaaccttctttcactcttcttcccaaccgacaacccga |
501 |
Q |
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| T |
39488736 |
ttgaagatccagtcattttgtgctttccataacacccacataataatgtaaaaaattaacatcaaccttctttcactcttcttcccaaccgacaacccga |
39488835 |
T |
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| Q |
502 |
tgaagctagataatgatttgnnnnnnntctggtgtaattggtaaaatcagtctcagccatcaaagtac |
569 |
Q |
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| T |
39488836 |
tgaagctagataatgatttgaaaaaaatctggtgtaattggtaaaatcagtctcagccatcaaagtac |
39488903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 351 - 405
Target Start/End: Original strand, 39488643 - 39488697
Alignment:
| Q |
351 |
taaagagacgactttgccagactagctaaaaaccaatgccatgccatttctttga |
405 |
Q |
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| T |
39488643 |
taaagagacgactttgccagactagctaaaaaccaatgccatgccatctctttga |
39488697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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