View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18320_high_13 (Length: 413)

Name: NF18320_high_13
Description: NF18320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18320_high_13
NF18320_high_13
[»] chr1 (3 HSPs)
chr1 (196-396)||(2896703-2896893)
chr1 (44-83)||(2897012-2897051)
chr1 (139-170)||(2896919-2896950)


Alignment Details
Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 196 - 396
Target Start/End: Complemental strand, 2896893 - 2896703
Alignment:
Q  196 caatataggctagagtgacnnnnnnnggtagaatggtataaaggaaaaaagaacacaatgaacaagctgagcctggagtatcaagcctcaacacaatctc 295  Q
    |||||||||||||||| ||       |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||    
T  2896893 caatataggctagagtaactttttttggtagaatggtataaaggaaaaaagaacacgaggaacaagctgagcctggagtatcaagcctcaacacagtctc 2896794  T
Q  296 cgactgnnnnnnnnnnnnntatatattcaaaaagtcacacctaaccttaaagaacaccctagtttgacagaaaaaatttgcgcatcagttgctcttttaa 395  Q
    ||||||              | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2896793 cgactgaaaa----------aaatattcaaaaagtcacacctaaccttaaagaacaccctagtttgacagaaaaaatttgtgcatcagttgctcttttaa 2896704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 83
Target Start/End: Complemental strand, 2897051 - 2897012
Alignment:
Q  44 gtcactaaaagtcaagtttattgtagtgaggtggggcatc 83  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2897051 gtcactaaaagtcaagtttattgtagtgaggtggggcatc 2897012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 139 - 170
Target Start/End: Complemental strand, 2896950 - 2896919
Alignment:
Q  139 taccgaaactgcatttaatccttaaaaaatgg 170  Q
    ||||||||||||||||||||||||||||||||    
T  2896950 taccgaaactgcatttaatccttaaaaaatgg 2896919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University