View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18320_high_14 (Length: 410)
Name: NF18320_high_14
Description: NF18320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18320_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 45519367 - 45519200
Alignment:
| Q |
1 |
ttctattaacctgatctttccatggaagaaactttattacaccattacacttcacattttattgagaaaatgttgaaaacaaaacttcactttccatgtt |
100 |
Q |
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| T |
45519367 |
ttctattaacttgatctttccatggaagaaactttattacaccattacacttcacattttattgagaaaatgttgaaaacaaaacttcactttccatgtt |
45519268 |
T |
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| Q |
101 |
aacttgtgatcataaaaacttcattcttcaaaacccatcaatggatgaacacatggtcaagtccaaaa |
168 |
Q |
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| T |
45519267 |
aacttgtgatcataaaaacttcattcttcaaaacccatcaatggatgaacacatggtcaagtccaaaa |
45519200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 262 - 398
Target Start/End: Complemental strand, 45519106 - 45518970
Alignment:
| Q |
262 |
gcaccgttgaaaatgacattgattcattttatccggttcaaaccgggtccaagggtttgcatgaagctgaaaaatgcagacacgtggcagaaaatgaagc |
361 |
Q |
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| T |
45519106 |
gcaccgttgaaaatgacattgattcattttatccggttcaaaccgggtccaagggtttgcatgaagctgaaaaatgcggacacgtggcagaaaatgaagc |
45519007 |
T |
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| Q |
362 |
acttgaagtgatgggattgagattcatcaatgatatt |
398 |
Q |
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| T |
45519006 |
acttgaagtgatgggattgaaattcatcaatgatatt |
45518970 |
T |
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