View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18320_high_23 (Length: 357)
Name: NF18320_high_23
Description: NF18320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18320_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 340
Target Start/End: Original strand, 43515720 - 43516041
Alignment:
| Q |
19 |
gaaagacctgagctatgacagcaggtgtatcaaaatcaggctcaccagccgccaagagaataactggaacgccagcttgaacaagagcggttgcttgatc |
118 |
Q |
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| T |
43515720 |
gaaagacctgagctatgacagcaggtgaatcaaaatcaggctcaccagccgccaagagaataactggaacgccagcttgaacaagagcggttgcttgatc |
43515819 |
T |
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| Q |
119 |
ggttatagccacagtccttgaaggtttcacagcattgacacgtggactcaatgaaatatcaacttctaaatcatcattatcagaaacggtttttgacttc |
218 |
Q |
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| T |
43515820 |
ggttatagccacagtccttgaaggtttcacagcattgacacgtggactcaatgaaatatcaacttctaaatcatcattatcagaaacggtttttgacttc |
43515919 |
T |
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| Q |
219 |
acagttattcttcctcttctgttctgttccaccccaacaacatattttacggtcttgtgagggaaggtggaaaggtttgagcagaaagagacgtggagag |
318 |
Q |
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| T |
43515920 |
acagttattcttcctcttctgttctggtccaccccaacaacatattttacggtcttgtgagggaaggtggaaaggtttgagcagaaagagacgtggagag |
43516019 |
T |
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| Q |
319 |
attggtgagggaaagagattcc |
340 |
Q |
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| T |
43516020 |
attggtgagggaaagagattcc |
43516041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 42 - 184
Target Start/End: Original strand, 38106334 - 38106476
Alignment:
| Q |
42 |
ggtgtatcaaaatcaggctcaccagccgccaagagaataactggaacgccagcttgaacaagagcggttgcttgatcggttatagccacagtccttgaag |
141 |
Q |
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||||||||||||||||| ||||| || |||||| ||||||| ||||||||||||||||| |||||||| |||||||| || ||||| ||||| ||||||| |
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| T |
38106334 |
ggtgtatcaaaatcaggttcaccggcagccaagcgaataacaggaacgccagcttgaacgagagcggtggcttgatcagtaatagcgacagttcttgaag |
38106433 |
T |
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| Q |
142 |
gtttcacagcattgacacgtggactcaatgaaatatcaacttc |
184 |
Q |
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| T |
38106434 |
gcttaacagcattgacacgtggactcaatgaaatatcaacttc |
38106476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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