View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18320_high_25 (Length: 322)
Name: NF18320_high_25
Description: NF18320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18320_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 24268966 - 24268654
Alignment:
| Q |
1 |
attgatctttgattggtctgtgattattgtcttgtattgttgctgtaagtgcataaataaatattggcaagttaggaaagacaaattgataaagattctt |
100 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24268966 |
attgatctttgattggtctgtgattattgccttgtattgttgctgtaagtgcataaataaatattggcaagttaggaaagacaaattgataaagattctc |
24268867 |
T |
|
| Q |
101 |
tgtctctcatgcacttgtcaaatgtagcatatcttttgggacagtttcttaatttgtgctatgtttagcaaagttatgtaattttattaatttacctgta |
200 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24268866 |
tatctctcatgcacttgtcaaatgtagcatatcttttgggacagtttcttaatttgtgctatgtttagcaaagttatgtaattttattaatttacttgta |
24268767 |
T |
|
| Q |
201 |
gtcatgatagcagatttaaaagctgcaggactccagttaggataaattgttttgagaagagcaacaatggcagaaacatgagggcatgatatagaagttc |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24268766 |
gtcatgatagcagatttaaaagctgcaggactccaattaggataaattgttttgagaagagcaacaatggcagaaacatgagggcatgatatagaagttc |
24268667 |
T |
|
| Q |
301 |
ctgaccctatatt |
313 |
Q |
| |
|
||||||||||||| |
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|
| T |
24268666 |
ctgaccctatatt |
24268654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 302
Target Start/End: Original strand, 31049651 - 31049760
Alignment:
| Q |
193 |
tacctgtagtcatgatagcagatttaaaagctgcaggactccagttaggataaattgttttgagaagagcaacaatggcagaaacatgagggcatgatat |
292 |
Q |
| |
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||||||| ||||| ||||| ||||||| |||||| |||||||| ||||||| || |||||||| ||| || || || ||| ||||||||| || || || |
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| T |
31049651 |
tacctgtggtcataatagctgatttaatagctgctggactccaattaggatgaagtgttttgataagtccagcagtgccagcaacatgaggacaagacat |
31049750 |
T |
|
| Q |
293 |
agaagttcct |
302 |
Q |
| |
|
|||||||||| |
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|
| T |
31049751 |
agaagttcct |
31049760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 302
Target Start/End: Original strand, 31144731 - 31144832
Alignment:
| Q |
201 |
gtcatgatagcagatttaaaagctgcaggactccagttaggataaattgttttgagaagagcaacaatggcagaaacatgagggcatgatatagaagttc |
300 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||| ||||||| || |||||||| ||| || || || || ||||||||| || || |||||||||| |
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|
| T |
31144731 |
gtcatgatagctgatttaatagctgcaggactccaattaggatgaagtgttttgataagtccagcagtgccaacaacatgaggacaagacatagaagttc |
31144830 |
T |
|
| Q |
301 |
ct |
302 |
Q |
| |
|
|| |
|
|
| T |
31144831 |
ct |
31144832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 302
Target Start/End: Original strand, 31162555 - 31162656
Alignment:
| Q |
201 |
gtcatgatagcagatttaaaagctgcaggactccagttaggataaattgttttgagaagagcaacaatggcagaaacatgagggcatgatatagaagttc |
300 |
Q |
| |
|
||||||||||| ||||||| |||||| |||||||| ||||||| || |||||||| ||| || || || ||| ||||||||| || || |||||||||| |
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| T |
31162555 |
gtcatgatagctgatttaatagctgctggactccaattaggatgaagtgttttgataagtccagcagtgccagcaacatgaggacaagacatagaagttc |
31162654 |
T |
|
| Q |
301 |
ct |
302 |
Q |
| |
|
|| |
|
|
| T |
31162655 |
ct |
31162656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 302
Target Start/End: Complemental strand, 31203090 - 31202981
Alignment:
| Q |
193 |
tacctgtagtcatgatagcagatttaaaagctgcaggactccagttaggataaattgttttgagaagagcaacaatggcagaaacatgagggcatgatat |
292 |
Q |
| |
|
||||||| ||||||||||| ||||||| |||||| |||||||| ||||||| | |||||||| ||| | ||||| | | |||||||||||| || || |
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|
| T |
31203090 |
tacctgtggtcatgatagctgatttaatagctgctggactccaattaggatgcaatgttttgataagtcccgcaatgccggcaacatgagggcaagacat |
31202991 |
T |
|
| Q |
293 |
agaagttcct |
302 |
Q |
| |
|
|||||||||| |
|
|
| T |
31202990 |
agaagttcct |
31202981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 302
Target Start/End: Original strand, 31061982 - 31062083
Alignment:
| Q |
201 |
gtcatgatagcagatttaaaagctgcaggactccagttaggataaattgttttgagaagagcaacaatggcagaaacatgagggcatgatatagaagttc |
300 |
Q |
| |
|
||||| ||||| ||||||| |||||| |||||||| ||||||| || |||||||| ||| || || | ||| |||||||||||| || |||||||||| |
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|
| T |
31061982 |
gtcataatagctgatttaatagctgctggactccaattaggatgaagtgttttgataagtccagcagtcccagcaacatgagggcaagacatagaagttc |
31062081 |
T |
|
| Q |
301 |
ct |
302 |
Q |
| |
|
|| |
|
|
| T |
31062082 |
ct |
31062083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 301
Target Start/End: Complemental strand, 42315347 - 42315247
Alignment:
| Q |
201 |
gtcatgatagcagatttaaaagctgcaggactccagttaggataaattgttttgagaagagcaacaatggcagaaacatgagggcatgatatagaagttc |
300 |
Q |
| |
|
||||| ||||| ||||| | |||||| |||||||| ||||||| || |||||||||||| | | ||| |||| ||||||||||||| |||||||||| |
|
|
| T |
42315347 |
gtcataatagctgatttgatagctgctggactccatttaggatgaagtgttttgagaaggcctgctatgccagacacatgagggcatgccatagaagttc |
42315248 |
T |
|
| Q |
301 |
c |
301 |
Q |
| |
|
| |
|
|
| T |
42315247 |
c |
42315247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 302
Target Start/End: Original strand, 37016355 - 37016464
Alignment:
| Q |
193 |
tacctgtagtcatgatagcagatttaaaagctgcaggactccagttaggataaattgttttgagaagagcaacaatggcagaaacatgagggcatgatat |
292 |
Q |
| |
|
|||| ||||||||||| |||||||| | || || |||||||| |||||| || ||| ||||||||| | |||||| ||| ||||||||| || || || |
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|
| T |
37016355 |
taccggtagtcatgatggcagatttgatggcagctggactccaactaggatgaagtgtcttgagaagaccgacaatgccagcaacatgaggacaagacat |
37016454 |
T |
|
| Q |
293 |
agaagttcct |
302 |
Q |
| |
|
||||||||| |
|
|
| T |
37016455 |
tgaagttcct |
37016464 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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