View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18320_high_31 (Length: 251)
Name: NF18320_high_31
Description: NF18320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18320_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 3303822 - 3303598
Alignment:
| Q |
17 |
attccaaagggtctgcagaagatggatgacaaaacattgattattcaagtaagacaatacctcgaaacaaaaaggtacttggttttatttgatgatgttt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3303822 |
attccaaagggtctgcagaagatggatgacaaaacattgattattcaagtaagacaatacctcgaaacaaaaaggtacttggttttatttgatgatgttt |
3303723 |
T |
|
| Q |
117 |
ggaaagaaaaattttctgatgagattaaacatgccttaattagtaataacaaaggaagtagaatcatcgtgaccactagaaatatgaaagtagcagaata |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3303722 |
ggaaagaaaaattttctgatgagattaaacatgccttaattagtaataacaaaggaagtagaatcatcgtgaccactagaaatatgaaagtagcagaata |
3303623 |
T |
|
| Q |
217 |
ttttaggaaagattttcctgttcat |
241 |
Q |
| |
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||||| ||||||||||||||||||| |
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| T |
3303622 |
ttttacgaaagattttcctgttcat |
3303598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 3357243 - 3357019
Alignment:
| Q |
17 |
attccaaagggtctgcagaagatggatgacaaaacattgattattcaagtaagacaatacctcgaaacaaaaaggtacttggttttatttgatgatgttt |
116 |
Q |
| |
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|||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
3357243 |
attccaaagggtctgcggaagatggatgacagaacattgattactcaagtaagacaataccttgagtcaaaaaggtacttggttttatttgatgatgttt |
3357144 |
T |
|
| Q |
117 |
ggaaagaaaaattttctgatgagattaaacatgccttaattagtaataacaaaggaagtagaatcatcgtgaccactagaaatatgaaagtagcagaata |
216 |
Q |
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|| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3357143 |
gggaagaaaatttttctgatgagattgaacatgccttaattagtaataacaaaggaagtagaatcatcgtgaccactagaaatatgaaagtagcagaata |
3357044 |
T |
|
| Q |
217 |
ttttaggaaagattttcctgttcat |
241 |
Q |
| |
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||||| |||| ||||||||||||| |
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| T |
3357043 |
ttttaagaaatcttttcctgttcat |
3357019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 3721805 - 3722029
Alignment:
| Q |
17 |
attccaaagggtctgcagaagatggatgacaaaacattgattattcaagtaagacaatacctcgaaacaaaaaggtacttggttttatttgatgatgttt |
116 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3721805 |
attccaaagggtctgcggaagatggatgacaaaacattgattactcgagtaagacaatacctcgagtcaaaaaggtacttggttttatttgatgatgttt |
3721904 |
T |
|
| Q |
117 |
ggaaagaaaaattttctgatgagattaaacatgccttaattagtaataacaaaggaagtagaatcatcgtgaccactagaaatatgaaagtagcagaata |
216 |
Q |
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|| ||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
3721905 |
gggaagaaaacttttctgatgagattgaacatgccttaattagtaataacgaaggaagtagaatcatcgtgaccactagaaaaatgaacgtagcagaata |
3722004 |
T |
|
| Q |
217 |
ttttaggaaagattttcctgttcat |
241 |
Q |
| |
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||||| |||| ||||||||||||| |
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| T |
3722005 |
ttttaagaaatcttttcctgttcat |
3722029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 3322097 - 3321873
Alignment:
| Q |
17 |
attccaaagggtctgcagaagatggatgacaaaacattgattattcaagtaagacaatacctcgaaacaaaaaggtacttggttttatttgatgatgttt |
116 |
Q |
| |
|
|||||||||||| ||| |||||||||||| || |||| |||| |||||| |||| |||||| ||| ||| ||||||||||| || ||||||||||||| |
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|
| T |
3322097 |
attccaaagggtttgctcaagatggatgacgaagcattcattaatcaagtgagacgataccttgaatcaaggaggtacttggtgttttttgatgatgttt |
3321998 |
T |
|
| Q |
117 |
ggaaagaaaaattttctgatgagattaaacatgccttaattagtaataacaaaggaagtagaatcatcgtgaccactagaaatatgaaagtagcagaata |
216 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||| ||||| ||| |||||||| || |
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| T |
3321997 |
gggaagaaaaattttctgatgagattgcgcatgccttaattagcaataacacaggaagtagaatcatcgtgaccacaagaaacatgcaagtagcaaaaag |
3321898 |
T |
|
| Q |
217 |
ttttaggaaagattttcctgttcat |
241 |
Q |
| |
|
||||| |||| ||||| |||||||| |
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|
| T |
3321897 |
ttttaagaaatatttttctgttcat |
3321873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 34 - 226
Target Start/End: Complemental strand, 3310481 - 3310289
Alignment:
| Q |
34 |
gaagatggatgacaaaacattgattattcaagtaagacaatacctcgaaacaaaaaggtacttggttttatttgatgatgtttggaaagaaaaattttct |
133 |
Q |
| |
|
|||||||||| |||| |||||||||| ||| ||||| ||| | || || |||| ||||||||| |||| ||||||||||||||||||||| |||| || |
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|
| T |
3310481 |
gaagatggataacaacacattgattactcatgtaaggcaacatcttcaatcaaagaggtacttgcttttgtttgatgatgtttggaaagaagcatttcct |
3310382 |
T |
|
| Q |
134 |
gatgagattaaacatgccttaattagtaataacaaaggaagtagaatcatcgtgaccactagaaatatgaaagtagcagaatattttaggaaa |
226 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||| ||||||||||| |||| |
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|
| T |
3310381 |
gatgaaattaaacatgccttaattagtaataacaaaggaagtagaatcatcatgaccactagaaaaatgaatatagtagaatattttaagaaa |
3310289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 34 - 241
Target Start/End: Original strand, 3201222 - 3201429
Alignment:
| Q |
34 |
gaagatggatgacaaaacattgattattcaagtaagacaatacctcgaaacaaaaaggtacttggttttatttgatgatgtttggaaagaaaaattttct |
133 |
Q |
| |
|
|||||||||| |||| |||||||||| ||| ||||| ||| | || || |||| ||||||||| |||| |||||||||||||||||||||| |||||| |
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|
| T |
3201222 |
gaagatggataacaacacattgattactcatgtaaggcaacatcttcaatcaaagaggtacttgcttttgtttgatgatgtttggaaagaaagtttttct |
3201321 |
T |
|
| Q |
134 |
gatgagattaaacatgccttaattagtaataacaaaggaagtagaatcatcgtgaccactagaaatatgaaagtagcagaatattttaggaaagattttc |
233 |
Q |
| |
|
||||||||| || ||||||||||||||||| ||||||||||||||||||| ||||||| ||||| ||| | ||||| |||||||||| |||| ||||| |
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|
| T |
3201322 |
gatgagattgaagatgccttaattagtaatgacaaaggaagtagaatcattgtgaccagtagaatgatgcatgtagctgaatattttaagaaatcttttc |
3201421 |
T |
|
| Q |
234 |
ctgttcat |
241 |
Q |
| |
|
||||||| |
|
|
| T |
3201422 |
ttgttcat |
3201429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 226
Target Start/End: Complemental strand, 3221345 - 3221139
Alignment:
| Q |
20 |
ccaaagggtctgcagaagatggatgacaaaacattgattattcaagtaagacaatacctcgaaacaaaaaggtacttggttttatttgatgatgtttgga |
119 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||| |||||| ||| ||||||| ||| ||||||||||||| || || |||||||||||||||| |
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|
| T |
3221345 |
ccaaagggtctgcaggagatggatgacattacattgattgctcaagtgagagaataccttgaatcaaaaaggtacttagtgttttttgatgatgtttgga |
3221246 |
T |
|
| Q |
120 |
aagaaaaattttctgatgagattaaacatgccttaattagtaataacaaaggaagtagaatcatcgtgaccactagaaatatgaaagtagcagaatattt |
219 |
Q |
| |
|
|||||| |||| |||||||||| | |||| | || |||||| ||||| ||||||||||| ||||||||||||| ||| ||||||| |||||||| |
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|
| T |
3221245 |
aagaaattttttgtgatgagattgtaaatgctatgtctaataataagaaaggtagtagaatcattgtgaccactagaacaatgcaagtagctgaatattt |
3221146 |
T |
|
| Q |
220 |
taggaaa |
226 |
Q |
| |
|
||||||| |
|
|
| T |
3221145 |
taggaaa |
3221139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 3198230 - 3198006
Alignment:
| Q |
17 |
attccaaagggtctgcagaagatggatgacaaaacattgattattcaagtaagacaatacctcgaaacaaaaaggtacttggttttatttgatgatgttt |
116 |
Q |
| |
|
||||||||||||||| || ||||| |||| | ||||||| || ||| || || |||||| ||| |||| ||||||||| | | |||||||||||| |
|
|
| T |
3198230 |
attccaaagggtctgaaggagatgcatgatattacattgactactcatgtgagggcataccttgaatcaaagaggtacttgatgtggtttgatgatgttc |
3198131 |
T |
|
| Q |
117 |
ggaaagaaaaattttctgatgagattaaacatgccttaattagtaataacaaaggaagtagaatcatcgtgaccactagaaatatgaaagtagcagaata |
216 |
Q |
| |
|
|||||||| ||||| |||| | ||| || ||||||| | ||||||||||| |||||||||||||| ||||||||||||| ||| | | ||||||||| |
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|
| T |
3198130 |
ggaaagaagaatttgctgaagggatcgaatatgccttggtaagtaataacaacggaagtagaatcattgtgaccactagaatgatgcatgcagcagaata |
3198031 |
T |
|
| Q |
217 |
ttttaggaaagattttcctgttcat |
241 |
Q |
| |
|
|||| || || |||||||| |||| |
|
|
| T |
3198030 |
ttttcgggaatcttttcctggtcat |
3198006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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