View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18320_high_37 (Length: 240)
Name: NF18320_high_37
Description: NF18320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18320_high_37 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 3 - 237
Target Start/End: Original strand, 43828283 - 43828516
Alignment:
| Q |
3 |
aatatctaaacaatcgaacaaaaggtttgttccatttcatctaacttcatttagctctactttgttttgtttcatctattcaaacaaagcctaaatgtga |
102 |
Q |
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| T |
43828283 |
aatatctaaacaatcgaacaaaaggtttgttccatttcatctaacttcatttagctctactttattttgtttcatctattcaaacaaagcctaaatgtga |
43828382 |
T |
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| Q |
103 |
acacacatctcccttnnnnnnnncaaaagaaatgtgaacacacctcataattagactttaaactttggtttgaccagatctcaattgttgaattggttta |
202 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43828383 |
acacacatctccc-taaaaaaaacaaaagaaatgtgaacacacctcataattagactttaaactttggtttgaccagatctcaattgttgaattgattta |
43828481 |
T |
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| Q |
203 |
ttttaccacgtttcaataaattcatagtttctaat |
237 |
Q |
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|||||||||||||||||||||||||||||| |||| |
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| T |
43828482 |
ttttaccacgtttcaataaattcatagtttgtaat |
43828516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 43840887 - 43840946
Alignment:
| Q |
179 |
gatctcaattg-ttgaattggtttattttaccacgtttcaataaattcatagtttctaat |
237 |
Q |
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||||||||||| ||||||||| |||||||| ||| |||||||||||||||| || ||||| |
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| T |
43840887 |
gatctcaattgcttgaattggcttattttatcacatttcaataaattcataattcctaat |
43840946 |
T |
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