View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18320_high_4 (Length: 542)
Name: NF18320_high_4
Description: NF18320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18320_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 292 - 525
Target Start/End: Original strand, 26661833 - 26662066
Alignment:
| Q |
292 |
cttacatagcagattaaactagaagatgaagaccgaggtgagtgactgccacttccgtctctatttttcgtttgtgctaacatctaatctatgtcgttaa |
391 |
Q |
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| T |
26661833 |
cttacaaagcagattaaactagaagatgaagaccgaggtgagtgactgccacttccgtctctatttttcgtttgtgctaacatctaatctatgtcgttaa |
26661932 |
T |
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| Q |
392 |
atcttagacaagggtgcagagtgctgaaccccaaaaccactatagtgcttctcatgacaggtattttagagaatgcagttactttttctgttactttgag |
491 |
Q |
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| T |
26661933 |
atcttagacaagggtgcagagtgctgaaccccaaaaccactatagtgcttctcatgacaggtattttagagaatgcaattactttttctgttactttgag |
26662032 |
T |
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| Q |
492 |
aacatcaaatgaagttaactaattttcttaaagg |
525 |
Q |
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| T |
26662033 |
aacatcaaatgaagttaactaattttcttaaagg |
26662066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 122 - 228
Target Start/End: Original strand, 26661676 - 26661769
Alignment:
| Q |
122 |
tttcttgaattttttaaattgctatcaaagatggtggttatgactccatgataccgattgatgtgaaactaagatgaagtttcaagaaaaaagatctttg |
221 |
Q |
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| T |
26661676 |
tttcttgaattttttaaattgctatcaaagatggtggttatgactccatgataccg-------------taagatgaagtttcaagaaaaaagatctttg |
26661762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 455 - 525
Target Start/End: Complemental strand, 40270000 - 40269930
Alignment:
| Q |
455 |
ttttagagaatgcagttactttttctgttactttgagaacatcaaatgaagttaactaattttcttaaagg |
525 |
Q |
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| T |
40270000 |
ttttagagaatacaactactttttctattactttgagaaaattaaatgaagttgactacttttcttaaagg |
40269930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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