View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18320_high_9 (Length: 482)
Name: NF18320_high_9
Description: NF18320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18320_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 156 - 474
Target Start/End: Complemental strand, 7034670 - 7034357
Alignment:
| Q |
156 |
ctatattttgtgctttgttctgttttacatgtaaggatagttaagcaaaagttagaattagcattggtatctgactttaattttgcac----gtatctcc |
251 |
Q |
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| T |
7034670 |
ctatattttgtgctttgttctgatttacatgtatggatagttgtgcaaaagttagaattagcattggtatttgactataattttgcactcttgtatctcc |
7034571 |
T |
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| Q |
252 |
aattttctaaaagggtgtctggaataagcaacacactaggacttggcatcaaatttagcacatctaaacttatcctaaatattctttcgaaagacatttc |
351 |
Q |
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| T |
7034570 |
aattttctaaaagggtgtctggaataagcaacatactaggacttggcatcaaatttagcacatctaagcttatcctaaatatt---------gacatttc |
7034480 |
T |
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| Q |
352 |
ttgcaatcaaattacatgattcttttgctgttatatttgtactagtttttagttatctggaattacttcgtgatgattattcttgctgtttctaattctg |
451 |
Q |
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| T |
7034479 |
ttgcaatcaaattacatgattcttttgctgttatatttgtactagtttttagttatctggaattacttcgtgatgtttattcttgctgtttctaattctg |
7034380 |
T |
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| Q |
452 |
tttcatcattttgttgatgatgt |
474 |
Q |
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| T |
7034379 |
tttcatcatttggttgttgatgt |
7034357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 7883085 - 7882981
Alignment:
| Q |
18 |
ttttgcagattcttgatcaattttcttctcaaaaatattaggatcaatgcactgatgaattagaaacaagccctttgcatctttctttcttaattttcga |
117 |
Q |
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| T |
7883085 |
ttttgcagattcttgatcaattttcttctcaaaaatattaggatcaatgcactgatgaattagaaacaagccctttgcatctttctttcttaatttttga |
7882986 |
T |
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| Q |
118 |
tttgc |
122 |
Q |
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| T |
7882985 |
tttgc |
7882981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 251 - 364
Target Start/End: Complemental strand, 29376473 - 29376360
Alignment:
| Q |
251 |
caattttctaaaagggtgtctggaataagcaacacactaggacttggcatcaaatttagcacatctaaacttatcctaaatattctttcgaaagacattt |
350 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||||||| | ||||| |||||||| |||||| | |||||||||||||| ||||||||| |
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| T |
29376473 |
caatttttcaaaagggtgtctgaaataagcaacacactaggacttggtgttaaattcagcacatcaaaacttgttctaaatattctttcaaaagacattc |
29376374 |
T |
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| Q |
351 |
cttgcaatcaaatt |
364 |
Q |
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| T |
29376373 |
tttgcaatcaaatt |
29376360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 44756240 - 44756136
Alignment:
| Q |
19 |
tttgcagattcttgatcaattttcttctcaaaaa-tattaggatcaatgcactgatgaattagaaacaagccctttgcatctttctttcttaattttcga |
117 |
Q |
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|||||| |||||||||||| | |||||| ||||| ||||||| ||||||||||||||||||| |||||||| ||||||||||||||||| |||| |||| |
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| T |
44756240 |
tttgcaaattcttgatcaactatcttctaaaaaaatattagggccaatgcactgatgaattaggaacaagccttttgcatctttctttctcaattctcga |
44756141 |
T |
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| Q |
118 |
tttgc |
122 |
Q |
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| T |
44756140 |
tttgc |
44756136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 16489443 - 16489500
Alignment:
| Q |
244 |
gtatctccaattttctaaaagggtgtctggaataagcaacacactaggacttggcatc |
301 |
Q |
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| T |
16489443 |
gtatctccaatttttcaaaagggtgttaggaataagtaacacactaggacttgacatc |
16489500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 462
Target Start/End: Original strand, 16490530 - 16490604
Alignment:
| Q |
388 |
ttgtactagtttttagttatctggaattacttcgtgatgattattcttgctgtttctaattctgtttcatcattt |
462 |
Q |
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| T |
16490530 |
ttgtactagttattaggtctttggaattacttaatgttgtttatttttgctgcttctaattttgtttcatcattt |
16490604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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