View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18320_low_12 (Length: 429)
Name: NF18320_low_12
Description: NF18320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18320_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 16 - 411
Target Start/End: Original strand, 129497 - 129892
Alignment:
| Q |
16 |
atcataacagaaatcatagacaaactaaaggatgatgcgttcaaaagaatcagcatatgtgggatgggtggagtgggaaaaaccacattggttaaagaac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
129497 |
atcataacagaaatcatagacaaactaaaggatgatgcgttcaaaagaatcagcatatgtgggatgggtggagtgggaaaaaccacattggttaaagaac |
129596 |
T |
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| Q |
116 |
tcatcaaatctgtagaaaatgagttatttgataaagttgtaatggcagtgatttcccaaaatccagattacaagaatatacagagtcaaattgccgattg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
129597 |
tcatcaaatctgtagaaaatgagttatttgataaagttgtaatggcagtgatttcccaaaatccagattacaagaatatacagagtcaaattgctgattg |
129696 |
T |
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| Q |
216 |
tttaggcttgagtttgaaaagtgaaagtgtggaaggaagaggcagggaattaatgcaaagattgaaagaaattgatgatgatggaaagactaaagtctta |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
129697 |
tttaggcttgagtttgaaaagtgaaagtgtggaaggaagaggcagggaattaatgcaaagattgaaagaaattgatgatgatggaaagactaaagtccta |
129796 |
T |
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| Q |
316 |
attgtgctcgacgatgtgtggagcgaacttaattttgattgggtaggaattccatctcgagataaccaaaaatgtatcaaaattgtattcacatca |
411 |
Q |
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| T |
129797 |
attgtgctcgacgatgtgtggagcgaacttaattttgattgggtaggaattccatctcgagataaccaaaaatgtatcaaaattgtattcacatca |
129892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 411
Target Start/End: Complemental strand, 34555299 - 34554904
Alignment:
| Q |
16 |
atcataacagaaatcatagacaaactaaaggatgatgcgttcaaaagaatcagcatatgtgggatgggtggagtgggaaaaaccacattggttaaagaac |
115 |
Q |
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| T |
34555299 |
atcataaaaggagtcatagagaaactgaaggatgataagttcaaaagaataagcatatgtggaatgggtggagtgggaaaaaccactctggtaaaagaaa |
34555200 |
T |
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| Q |
116 |
tcatcaaatctgtagaaaatgagttatttgataaagttgtaatggcagtgatttcccaaaatccagattacaagaatatacagagtcaaattgccgattg |
215 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| |||| || ||||||||||| ||||| |
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| T |
34555199 |
tcatcaaatctgtagaaaataagttatttgataaagttgtgatggcagtgatatcccaaaatcctgattacaagtatatccaaagtcaaattgctgattg |
34555100 |
T |
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| Q |
216 |
tttaggcttgagtttgaaaagtgaaagtgtggaaggaagaggcagggaattaatgcaaagattgaaagaaattgatgatgatggaaagactaaagtctta |
315 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| || || ||||| ||||| |||||||||||||||| ||||||| || |
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| T |
34555099 |
tttaggcttgagtttgaaaagtgaaagtgtggatggaagaggcagggaattaattcataggttgaaggaaatcgatgatgatggaaagattaaagtccta |
34555000 |
T |
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| Q |
316 |
attgtgctcgacgatgtgtggagcgaacttaattttgattgggtaggaattccatctcgagataaccaaaaatgtatcaaaattgtattcacatca |
411 |
Q |
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|||||||||| ||||||||||| || ||||||||||||||||| ||| |||||||||||||||| |||||||||| |||||| ||||||||||| |
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| T |
34554999 |
gttgtgctcgatgatgtgtggagtgagcttaattttgattgggtgggacttccatctcgagataatcaaaaatgtagcaaaataatattcacatca |
34554904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 68 - 221
Target Start/End: Original strand, 34371285 - 34371438
Alignment:
| Q |
68 |
gcatatgtgggatgggtggagtgggaaaaaccacattggttaaagaactcatcaaatctgtagaaaatgagttatttgataaagttgtaatggcagtgat |
167 |
Q |
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|||| |||||||||||||||||||| ||||||||| | || ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| || | |
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| T |
34371285 |
gcatttgtgggatgggtggagtggggaaaaccacacttgtgaaagaactcatcaaaactgtagaaaataagttatttgataaagttgtgatggctgttgt |
34371384 |
T |
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| Q |
168 |
ttcccaaaatccagattacaagaatatacagagtcaaattgccgattgtttagg |
221 |
Q |
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| T |
34371385 |
atcccaaaatcctgattacgagaagattcaaagacaaattgctgatggtttagg |
34371438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 34566916 - 34566860
Alignment:
| Q |
67 |
agcatatgtgggatgggtggagtgggaaaaaccacattggttaaagaactcatcaaa |
123 |
Q |
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||||| ||||||||||| |||||||||||||||||| |||| |||||| |||||||| |
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| T |
34566916 |
agcatctgtgggatgggcggagtgggaaaaaccacaatggtgaaagaagtcatcaaa |
34566860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 15896591 - 15896535
Alignment:
| Q |
67 |
agcatatgtgggatgggtggagtgggaaaaaccacattggttaaagaactcatcaaa |
123 |
Q |
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||||| ||||||||||| ||||| |||||||||||| |||| |||||| |||||||| |
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| T |
15896591 |
agcatttgtgggatgggcggagtaggaaaaaccacactggtgaaagaagtcatcaaa |
15896535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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