View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18320_low_13 (Length: 418)

Name: NF18320_low_13
Description: NF18320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18320_low_13
NF18320_low_13
[»] chr3 (19 HSPs)
chr3 (16-409)||(9441542-9441935)
chr3 (16-410)||(9416534-9416928)
chr3 (16-410)||(9407327-9407721)
chr3 (16-410)||(9425534-9425928)
chr3 (20-410)||(9397746-9398138)
chr3 (287-410)||(9617495-9617618)
chr3 (289-408)||(9494842-9494961)
chr3 (255-410)||(41985589-41985744)
chr3 (287-409)||(9646396-9646518)
chr3 (287-409)||(9655389-9655511)
chr3 (255-411)||(9432856-9433012)
chr3 (290-401)||(9343815-9343926)
chr3 (287-390)||(9626512-9626615)
chr3 (287-407)||(9448278-9448398)
chr3 (295-406)||(9613993-9614104)
chr3 (287-410)||(41980815-41980938)
chr3 (186-226)||(9377237-9377277)
chr3 (255-357)||(9336554-9336656)
chr3 (255-327)||(9695616-9695688)
[»] chr2 (1 HSPs)
chr2 (258-405)||(20694304-20694451)
[»] chr1 (5 HSPs)
chr1 (299-410)||(4439821-4439932)
chr1 (308-410)||(18991165-18991267)
chr1 (341-393)||(8814448-8814500)
chr1 (287-410)||(4428592-4428715)
chr1 (344-393)||(246845-246894)
[»] chr8 (1 HSPs)
chr8 (255-393)||(44688785-44688923)
[»] chr6 (6 HSPs)
chr6 (290-393)||(7041474-7041577)
chr6 (290-393)||(7046817-7046920)
chr6 (290-330)||(7025797-7025837)
chr6 (290-330)||(7029854-7029894)
chr6 (290-330)||(9159530-9159570)
chr6 (290-330)||(9170858-9170898)
[»] chr7 (1 HSPs)
chr7 (304-393)||(3695668-3695757)


Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 16 - 409
Target Start/End: Original strand, 9441542 - 9441935
Alignment:
Q  16 gttctgttacctcaacaactattggaaacccatttctgacatgtcaactaagcatgtagatatctgtgtgtttaaaggacaattttacttggtcgacaat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  9441542 gttctgttacctcaacaactattggaaacccatttctgacatgtcaacaaagtatgtagatatctgtgtgtttaaaggtcaattttacttggtcgacaat 9441641  T
Q  116 actggtcggacagttgcaattgaatcagacttgagtgtccagttagtggataatccttttattcctggagatagaaaattactggtggagagtgagggcg 215  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9441642 actggtcggacagttgcaattgaatcagactcgagtgtccagttagtggataatccttttattcctggagatagaaaattactggtggagagtgagggcg 9441741  T
Q  216 agttgttgttagttaatatttatgagaatcttaagacttttgatgtgttcagtcttgatgagaataataaaaaatgggtgaagttgatgagtttagggga 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||| |||||||||||||||||||||||||||    
T  9441742 agttgttgttagttaatatttatgagaatcttaagacttttgatgtgtttagtcttgacaagaataataaaacatgggtgaagttgatgagtttagggga 9441841  T
Q  316 tagggttttgttctttgtgaataaatgttcattttctgcttcagccttggatatgtgtgttgccaaagggaattgtgttgtctttattgatgat 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||    
T  9441842 tagggttttgttctttgtgaataaatgttcattttctgcttcagccttggatatgtgtgttgtcaaagggaattccgttgtctttattgatgat 9441935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 410
Target Start/End: Complemental strand, 9416928 - 9416534
Alignment:
Q  16 gttctgttacctcaacaactattggaaacccatttctgacatgtcaactaagcatgtagatatctgtgtgtttaaaggacaattttacttggtcgacaat 115  Q
    ||||||||| |||||||| | ||||||||| ||||| ||||||||||||||  |||||||||| |||||||||||| |    ||||| ||||||||||||    
T  9416928 gttctgttagctcaacaaattttggaaaccaatttccgacatgtcaactaaatatgtagatatttgtgtgtttaaaaggaggttttatttggtcgacaat 9416829  T
Q  116 actggtcggacagttgcaattgaatcagacttgagtgtccagttagtggataatccttttattcctggagatagaaaattactggtggagagtgagggcg 215  Q
    ||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |    
T  9416828 actggtcggacagttacaattgaatcagactcgagagtccagttagtggataatccttttattcatggagatataaaattactggtggagagtgagggtg 9416729  T
Q  216 agttgttgttagttaatatttatgagaatcttaagacttttgatgtgttcagtcttgatgagaataataaaaaatgggtgaagttgatgagtttagggga 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||| ||||||||||||    
T  9416728 agttgttgttagttaatatttatgagaatcttaagacttttgatgtgttctgtcttgacgagaagaataaaaaatgggtgaagttgacgagtttagggga 9416629  T
Q  316 tagggttttgttctttgtgaataaatgttcattttctgcttcagccttggatatgtgtgttgccaaagggaattgtgttgtctttattgatgatg 410  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  9416628 tagggtgttgttcttcgtgaataaatgttcattttctgcttcagccttggatatgtgtgttactaaagggaattgtgttgtctttattgatgatg 9416534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 410
Target Start/End: Complemental strand, 9407721 - 9407327
Alignment:
Q  16 gttctgttacctcaacaactattggaaacccatttctgacatgtcaactaagcatgtagatatctgtgtgtttaaaggacaattttacttggtcgacaat 115  Q
    |||||||||||||||||| | ||||||||||||||| ||||||||||||||  |||||||||| |||||||||||| |    |||||||||||||||||     
T  9407721 gttctgttacctcaacaaattttggaaacccatttccgacatgtcaactaaatatgtagatatttgtgtgtttaaaaggaggttttacttggtcgacaaa 9407622  T
Q  116 actggtcggacagttgcaattgaatcagacttgagtgtccagttagtggataatccttttattcctggagatagaaaattactggtggagagtgagggcg 215  Q
    ||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |    
T  9407621 actggtcggacagttacaattgaatcggactcgagtgtccagttagtggataatccttttattcatggagatagaaaattactagtggagagtgagggtg 9407522  T
Q  216 agttgttgttagttaatatttatgagaatcttaagacttttgatgtgttcagtcttgatgagaataataaaaaatgggtgaagttgatgagtttagggga 315  Q
      |||||||| |||||||||||||||||||||| || |||||||||||| || ||||| ||||| ||||||| |||||||||||||||||||||||||||    
T  9407521 ccttgttgttggttaatatttatgagaatcttatgaattttgatgtgtttagacttgacgagaagaataaaagatgggtgaagttgatgagtttagggga 9407422  T
Q  316 tagggttttgttctttgtgaataaatgttcattttctgcttcagccttggatatgtgtgttgccaaagggaattgtgttgtctttattgatgatg 410  Q
    ||||||||||||||||||||||  ||||||||||||||||||||| | |||| |||||||||||||||||||||||||  |||||||||||||||    
T  9407421 tagggttttgttctttgtgaatggatgttcattttctgcttcagcttcggatttgtgtgttgccaaagggaattgtgtcttctttattgatgatg 9407327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 410
Target Start/End: Complemental strand, 9425928 - 9425534
Alignment:
Q  16 gttctgttacctcaacaactattggaaacccatttctgacatgtcaactaagcatgtagatatctgtgtgtttaaaggacaattttacttggtcgacaat 115  Q
    |||||||||||||||||| | ||||||||||||||| ||||||||||||||  |||| ||||| |||||||||||| |    ||||||||||| ||||||    
T  9425928 gttctgttacctcaacaaattttggaaacccatttccgacatgtcaactaaatatgttgatatttgtgtgtttaaaaggaggttttacttggtagacaat 9425829  T
Q  116 actggtcggacagttgcaattgaatcagacttgagtgtccagttagtggataatccttttattcctggagatagaaaattactggtggagagtgagggcg 215  Q
    ||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9425828 actggtcggacagttacaattgaatccgactcgagtgtccagttagtggataatccttttattcctggagatagaaaattactggtggagagtgagggtg 9425729  T
Q  216 agttgttgttagttaatatttatgagaatcttaagacttttgatgtgttcagtcttgatgagaataataaaaaatgggtgaagttgatgagtttagggga 315  Q
      |||||||| |||||||||||||||||||||| ||||||| ||||||| || ||||| ||||| |||||||||||||||||||||||||||||| || |    
T  9425728 ccttgttgttggttaatatttatgagaatcttatgacttttaatgtgtttagacttgacgagaagaataaaaaatgggtgaagttgatgagtttaaggaa 9425629  T
Q  316 tagggttttgttctttgtgaataaatgttcattttctgcttcagccttggatatgtgtgttgccaaagggaattgtgttgtctttattgatgatg 410  Q
    ||||||||||||||||||||||  ||||||||||||||||||||| | |||| |||||||||||||||||||||||||  ||||||| |||||||    
T  9425628 tagggttttgttctttgtgaatggatgttcattttctgcttcagcttcggatttgtgtgttgccaaagggaattgtgtcatctttatcgatgatg 9425534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 410
Target Start/End: Complemental strand, 9398138 - 9397746
Alignment:
Q  20 tgttacctcaacaactattggaaacccatttctgacatgtcaactaagcatgtagatatctgtgtgtttaaaggacaattttacttggtcgacaatactg 119  Q
    |||| |||||||| |||||||||||||||||  ||||||||||||||  ||||| |||| |||||||||||| ||   ||||||||||| ||||||||||    
T  9398138 tgttccctcaacagctattggaaacccattttcgacatgtcaactaaatatgtatatatttgtgtgtttaaaagaaggttttacttggttgacaatactg 9398039  T
Q  120 gtcggacagttgcaattgaatcagacttgagtgtccagttagtggataatccttttattcctggagatagaaaattactggtggagagtgagggcgagtt 219  Q
    || ||||| ||||||||||||  |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  9398038 gtaggacaattgcaattgaatgggactcgagtgtctagttagtggataatccttttattcctggagatagaaaattactggtggagagtgagagtgagtt 9397939  T
Q  220 gttgttagttaatatttatgagaatcttaagacttttgatgtgttcagtcttgatgagaataat--aaaaaatgggtgaagttgatgagtttaggggata 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||  ||  |||||||| |||||||||||||||||||||||||    
T  9397938 gttgttagttaatatttatgagaatcttaagacttttgatgtgtttagacttgacgagaagtataaaaaaaatgcgtgaagttgatgagtttaggggata 9397839  T
Q  318 gggttttgttctttgtgaataaatgttcattttctgcttcagccttggatatgtgtgttgccaaagggaattgtgttgtctttattgatgatg 410  Q
    |||| |||||||||||||||  |||||||||||| |||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  9397838 gggtcttgttctttgtgaatggatgttcattttccgcttcagctttggatttgtgtgttgccaaagggaattgtgtcgtctttattgatgatg 9397746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 287 - 410
Target Start/End: Original strand, 9617495 - 9617618
Alignment:
Q  287 aaatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttcagccttggatatgtgtgttgccaaaggga 386  Q
    ||||||||||||||||  | |||||||||||||||||||||| ||||||||  |||||||||||||||||| || |  ||| |||||||| |||||||||    
T  9617495 aaatgggtgaagttgaaaaatttaggggatagggttttgttccttgtgaatggatgttcattttctgcttctgcttcagatttgtgtgtttccaaaggga 9617594  T
Q  387 attgtgttgtctttattgatgatg 410  Q
    |||||||  |||||||||| ||||    
T  9617595 attgtgtcatctttattgacgatg 9617618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 289 - 408
Target Start/End: Original strand, 9494842 - 9494961
Alignment:
Q  289 atgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttcagccttggatatgtgtgttgccaaagggaat 388  Q
    ||||||||| |||||||||||||||||||||||||||||||| | ||||  |||||| ||||||||||| || |  ||| |||| ||| |||||||||||    
T  9494842 atgggtgaatttgatgagtttaggggatagggttttgttcttggggaatggatgttcgttttctgcttctgcttctgatttgtgcgtttccaaagggaat 9494941  T
Q  389 tgtgttgtctttattgatga 408  Q
    |||||  |||||||||||||    
T  9494942 tgtgtcatctttattgatga 9494961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 255 - 410
Target Start/End: Complemental strand, 41985744 - 41985589
Alignment:
Q  255 ttgatgtgttcagtcttgatgagaataataaaaaatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgc 354  Q
    ||||||||||||| |||||||||||  | || |||||||| ||||||  ||||||||||||||| ||||||||||| | ||||  |||||| ||||||||    
T  41985744 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 41985645  T
Q  355 ttcagccttggatatgtgtgttgccaaagggaattgtgttgtctttattgatgatg 410  Q
    ||| || | |||| ||| ||||| |||||| ||||||||  |||||| ||||||||    
T  41985644 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatg 41985589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 287 - 409
Target Start/End: Original strand, 9646396 - 9646518
Alignment:
Q  287 aaatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttcagccttggatatgtgtgttgccaaaggga 386  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||   |   |||||| |||||||| ||||| | |||| |||||||| |||||||||    
T  9646396 aaatgggtgaagttgatgaatttaggggatagggttttgttttttggcgaaggatgttcgttttctgcatcagcttcggatttgtgtgtttccaaaggga 9646495  T
Q  387 attgtgttgtctttattgatgat 409  Q
    ||||  | |||||||| ||||||    
T  9646496 attgcatcgtctttatcgatgat 9646518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 287 - 409
Target Start/End: Original strand, 9655389 - 9655511
Alignment:
Q  287 aaatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttcagccttggatatgtgtgttgccaaaggga 386  Q
    ||||||||||||||||||| ||||||||||||||||||||| || |   |   |||||| |||||||| ||||| | |||| |||||||| |||||||||    
T  9655389 aaatgggtgaagttgatgaatttaggggatagggttttgtttttgggcgaaggatgttcgttttctgcatcagcttcggatttgtgtgtttccaaaggga 9655488  T
Q  387 attgtgttgtctttattgatgat 409  Q
    ||||  | |||||||| ||||||    
T  9655489 attgcatcgtctttatcgatgat 9655511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 411
Target Start/End: Complemental strand, 9433012 - 9432856
Alignment:
Q  255 ttgatgtgttcagtcttgatgagaataataaaaaatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgc 354  Q
    ||||||| ||||| |||||||||||  | |  || ||||||||| | | || |||||| ||||||||||||||| | | |  | ||| ||| ||||||||    
T  9433012 ttgatgttttcagacttgatgagaaggagaggaagtgggtgaagatcaagaatttaggagatagggttttgttcatagggcttgaatattccttttctgc 9432913  T
Q  355 ttcagccttggatatgtgtgttgccaaagggaattgtgttgtctttattgatgatgt 411  Q
    |||||||| |||| |||||||| || ||||||||||| |  ||||||||||||||||    
T  9432912 ttcagcctcggatttgtgtgtttccgaagggaattgtatcatctttattgatgatgt 9432856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 290 - 401
Target Start/End: Complemental strand, 9343926 - 9343815
Alignment:
Q  290 tgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttcagccttggatatgtgtgttgccaaagggaatt 389  Q
    ||||||||||| |  | |||||||||||| ||||||||||| | |||| ||||||| ||||||||||| || | |||| |||||||| | | ||| ||||    
T  9343926 tgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgcttctgcttcggatttgtgtgttcctagaggaaatt 9343827  T
Q  390 gtgttgtcttta 401  Q
    ||||||||||||    
T  9343826 gtgttgtcttta 9343815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 390
Target Start/End: Original strand, 9626512 - 9626615
Alignment:
Q  287 aaatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttcagccttggatatgtgtgttgccaaaggga 386  Q
    ||||||||||| ||||||| ||||||||||||||||||||| ||||  ||   |   ||||||||||| ||||| | |||| |||||||| |||||||||    
T  9626512 aaatgggtgaatttgatgaatttaggggatagggttttgttttttggcaaaggaacatcattttctgcatcagcttcggatttgtgtgtttccaaaggga 9626611  T
Q  387 attg 390  Q
    ||||    
T  9626612 attg 9626615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 407
Target Start/End: Complemental strand, 9448398 - 9448278
Alignment:
Q  287 aaatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttcagccttggatatgtgtgttgccaaaggga 386  Q
    |||||||||||||| |  | |||||||||||| ||||||||||| | |||| | ||||| ||||||||||| || | |||| ||||| || | | ||| |    
T  9448398 aaatgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgactgttcgttttctgcttctgcttcggatttgtgtcttcctagaggaa 9448299  T
Q  387 attgtgttgtctttattgatg 407  Q
    |||| |||||||||| |||||    
T  9448298 attgcgttgtctttactgatg 9448278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 406
Target Start/End: Original strand, 9613993 - 9614104
Alignment:
Q  295 gaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttcagccttggatatgtgtgttgccaaagggaattgtgtt 394  Q
    |||||||| || ||| ||||||| |||||| ||||| | || |  |||||||||||||||||| || |  ||| ||||| || ||||||| |||||||||    
T  9613993 gaagttgaagaattttggggatatggtttttttcttggggagtggatgttcattttctgcttctgcttcagatctgtgtcttaccaaaggaaattgtgtt 9614092  T
Q  395 gtctttattgat 406  Q
     |||||||||||    
T  9614093 atctttattgat 9614104  T

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Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 410
Target Start/End: Complemental strand, 41980938 - 41980815
Alignment:
Q  287 aaatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttcagccttggatatgtgtgttgccaaaggga 386  Q
    |||||||| ||||||| ||||||||||||||| ||||||||||| | ||||  |||||| |||| |||||| || |   || ||| ||||| |||||| |    
T  41980938 aaatgggtcaagttgacgagtttaggggatagagttttgttcttggggaatggatgttcgttttttgcttctgcttcaaatttgtctgttgtcaaaggaa 41980839  T
Q  387 attgtgttgtctttattgatgatg 410  Q
    ||||| || ||||| ||| |||||    
T  41980838 attgtattatctttgttggtgatg 41980815  T

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Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 9377277 - 9377237
Alignment:
Q  186 atagaaaattactggtggagagtgagggcgagttgttgtta 226  Q
    |||||||||| ||||||||||||||||| ||||||||||||    
T  9377277 atagaaaattgctggtggagagtgagggtgagttgttgtta 9377237  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 357
Target Start/End: Complemental strand, 9336656 - 9336554
Alignment:
Q  255 ttgatgtgttcagtcttgatgagaataataaaaaatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgc 354  Q
    |||||||||| || |||||||||||  | ||||  ||||| ||| ||| || |||||| |||| |||||||||||| | ||||  |||||| ||||||||    
T  9336656 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttttctgc 9336557  T
Q  355 ttc 357  Q
    |||    
T  9336556 ttc 9336554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 327
Target Start/End: Original strand, 9695616 - 9695688
Alignment:
Q  255 ttgatgtgttcagtcttgatgagaataataaaaaatgggtgaagttgatgagtttaggggatagggttttgtt 327  Q
    ||||||| ||||| |||||||||||  | || || ||||| |||||||  | |||||||||||||||||||||    
T  9695616 ttgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggatagggttttgtt 9695688  T

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Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 258 - 405
Target Start/End: Original strand, 20694304 - 20694451
Alignment:
Q  258 atgtgttcagtcttgatgagaataataaaaaatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttc 357  Q
    |||||||||| |||||||| ||  | || ||||||||||  ||||  ||||| ||||||||||||||||| || | ||||  |||||| |||||||||||    
T  20694304 atgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttttctgcttc 20694403  T
Q  358 agccttggatatgtgtgttgccaaagggaattgtgttgtctttattga 405  Q
     || | |||| |||||||||||||||||||||||||  ||||||||||    
T  20694404 tgcttcggatttgtgtgttgccaaagggaattgtgtcatctttattga 20694451  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 299 - 410
Target Start/End: Complemental strand, 4439932 - 4439821
Alignment:
Q  299 ttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttcagccttggatatgtgtgttgccaaagggaattgtgttgtct 398  Q
    ||||||||||| || |||||||||||||| || | ||||  |||||| ||||||||||| || | |||| |||||||| | ||||||||||||||  |||    
T  4439932 ttgatgagtttgggagatagggttttgtttttggggaatggatgttcgttttctgcttctgcttcggatttgtgtgtttctaaagggaattgtgtcatct 4439833  T
Q  399 ttattgatgatg 410  Q
    ||||||||||||    
T  4439832 ttattgatgatg 4439821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 308 - 410
Target Start/End: Complemental strand, 18991267 - 18991165
Alignment:
Q  308 ttaggggatagggttttgttctttgtgaataaatgttcattttctgcttcagccttggatatgtgtgttgccaaagggaattgtgttgtctttattgatg 407  Q
    |||||| |||||||||||||||| | ||||  |||||| ||||||||||| || |  ||| | | ||||| ||||||||||||||| ||||||||||| |    
T  18991267 ttagggaatagggttttgttcttggggaatggatgttcgttttctgcttctgcttctgatttatctgttgtcaaagggaattgtgtcgtctttattgacg 18991168  T
Q  408 atg 410  Q
    |||    
T  18991167 atg 18991165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 393
Target Start/End: Original strand, 8814448 - 8814500
Alignment:
Q  341 tgttcattttctgcttcagccttggatatgtgtgttgccaaagggaattgtgt 393  Q
    ||||||||||||||||| || |||||| |||||||| ||||||||||||||||    
T  8814448 tgttcattttctgcttctgctttggatttgtgtgttcccaaagggaattgtgt 8814500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 410
Target Start/End: Complemental strand, 4428715 - 4428592
Alignment:
Q  287 aaatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttcagccttggatatgtgtgttgccaaaggga 386  Q
    ||||||||||| |||| |||||| ||||||||||||||||| || | ||||  |||||  |||||||| || || |  ||  ||| |||| | |||||||    
T  4428715 aaatgggtgaaattgacgagtttgggggatagggttttgtttttggggaatggatgtttgttttctgcctctgcttctgagttgtctgttactaaaggga 4428616  T
Q  387 attgtgttgtctttattgatgatg 410  Q
    |||||||  |||||||||||||||    
T  4428615 attgtgtcatctttattgatgatg 4428592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 393
Target Start/End: Complemental strand, 246894 - 246845
Alignment:
Q  344 tcattttctgcttcagccttggatatgtgtgttgccaaagggaattgtgt 393  Q
    |||||||||||||| || |||||| ||||||||  |||||||||||||||    
T  246894 tcattttctgcttctgctttggatttgtgtgttcacaaagggaattgtgt 246845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 255 - 393
Target Start/End: Original strand, 44688785 - 44688923
Alignment:
Q  255 ttgatgtgttcagtcttgatgagaataataaaaaatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgc 354  Q
    ||||||||||||  ||  |||||||  |||| |||||||| ||||| | |||||||||| ||||  |||||||||| | |||| ||| |||||||||| |    
T  44688785 ttgatgtgttcacgctcaatgagaagcataagaaatgggtaaagttaacgagtttagggaatagaattttgttcttggggaatgaatattcattttctac 44688884  T
Q  355 ttcagccttggatatgtgtgttgccaaagggaattgtgt 393  Q
    | | || | |||| ||| | |||||||||||||||||||    
T  44688885 tactgcttcggatttgtctattgccaaagggaattgtgt 44688923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 393
Target Start/End: Complemental strand, 7041577 - 7041474
Alignment:
Q  290 tgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttcagccttggatatgtgtgttgccaaagggaatt 389  Q
    |||||||||||||  |||||||||||||||||||||||||| |   |   |||||| || |||| ||| || | |||| |||| ||||||||||||||||    
T  7041577 tgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgtttctgcttcggatttgtgcgttgccaaagggaatt 7041478  T
Q  390 gtgt 393  Q
    ||||    
T  7041477 gtgt 7041474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 393
Target Start/End: Complemental strand, 7046920 - 7046817
Alignment:
Q  290 tgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttcagccttggatatgtgtgttgccaaagggaatt 389  Q
    ||||||||||| | ||||||||||||||  ||||||||||| | ||  |||||||| |||||||||||    |  ||| ||| |||||||||||||||||    
T  7046920 tgggtgaagttaacgagtttaggggataaagttttgttcttggggataaaatgttcgttttctgcttctttttcagatttgtatgttgccaaagggaatt 7046821  T
Q  390 gtgt 393  Q
    ||||    
T  7046820 gtgt 7046817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 330
Target Start/End: Complemental strand, 7025837 - 7025797
Alignment:
Q  290 tgggtgaagttgatgagtttaggggatagggttttgttctt 330  Q
    ||||||||||||| ||||||||| |||||||||||||||||    
T  7025837 tgggtgaagttgacgagtttaggagatagggttttgttctt 7025797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 330
Target Start/End: Complemental strand, 7029894 - 7029854
Alignment:
Q  290 tgggtgaagttgatgagtttaggggatagggttttgttctt 330  Q
    ||||||||||||| |||||| ||||||||||||||||||||    
T  7029894 tgggtgaagttgacgagtttcggggatagggttttgttctt 7029854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 330
Target Start/End: Original strand, 9159530 - 9159570
Alignment:
Q  290 tgggtgaagttgatgagtttaggggatagggttttgttctt 330  Q
    |||||||| || | |||||||||||||||||||||||||||    
T  9159530 tgggtgaaattaacgagtttaggggatagggttttgttctt 9159570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 330
Target Start/End: Complemental strand, 9170898 - 9170858
Alignment:
Q  290 tgggtgaagttgatgagtttaggggatagggttttgttctt 330  Q
    |||||||| || | |||||||||||||||||||||||||||    
T  9170898 tgggtgaaattaacgagtttaggggatagggttttgttctt 9170858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 393
Target Start/End: Complemental strand, 3695757 - 3695668
Alignment:
Q  304 gagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttcagccttggatatgtgtgttgccaaagggaattgtgt 393  Q
    ||||||||||||||| ||||||||||| |  |  | ||||||||||||||||   || | |||| ||| || ||||||||||||||||||    
T  3695757 gagtttaggggatagagttttgttcttcggtatcatatgttcattttctgctattgcttcggatttgtctgctgccaaagggaattgtgt 3695668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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