View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18320_low_16 (Length: 406)
Name: NF18320_low_16
Description: NF18320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18320_low_16 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 17 - 406
Target Start/End: Complemental strand, 45519555 - 45519167
Alignment:
| Q |
17 |
agtatacactcatgaaaagatagagtataaaagaaatggaaagaaaattgcctactttcttgttcttgaattagtaggcaattttaaacaaatccatttt |
116 |
Q |
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| T |
45519555 |
agtatacactcatgaaaagatagagtataaaagaaatggaaagaaaattgcctactttcttgttcttgaattagtaggcaattttaaacaaatccatttt |
45519456 |
T |
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| Q |
117 |
gcaaattccagctaacatctaactgcttcaaggtcaaacttgaatgcaattattcaattgactctatgctagctccttttnnnnnnnnnttctattaacc |
216 |
Q |
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| T |
45519455 |
gcaaattccagctaacatctaactgcttcaaggtcaaacttgaatgcaattattcaattgactctatgctagctccttttaaaaaaaa-ttctattaact |
45519357 |
T |
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| Q |
217 |
tgatctttccatggaagaaactttattacaccattacacttcacattttattgagaaaatgttgaaaacaaaacttcactttccatgttaacttgtgatc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45519356 |
tgatctttccatggaagaaactttattacaccattacacttcacattttattgagaaaatgttgaaaacaaaacttcactttccatgttaacttgtgatc |
45519257 |
T |
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| Q |
317 |
ataaaaacttcattcttcaaaacccatcaatggatgaacacatggtcaagtccaaaacttctctcttagctctctttaaatcatcaccat |
406 |
Q |
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| T |
45519256 |
ataaaaacttcattcttcaaaacccatcaatggatgaacacatggtcaagtccaaaacttctctcttagctctctttaaatcatcaccat |
45519167 |
T |
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