View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18320_low_19 (Length: 390)
Name: NF18320_low_19
Description: NF18320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18320_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 36248563 - 36248291
Alignment:
| Q |
1 |
tattttgtgctttgggtgtttgatgaaatgtttcaaataatttattaattgannnnnnnngttggttgttgtgtatatatggttgacgatgttgatagac |
100 |
Q |
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| T |
36248563 |
tattttgtgctttaggtgtttgatgaaatgtttcaaataatttattaattgattttttttgttggttgttgtgtatatatggttgacgatgttgatagac |
36248464 |
T |
|
| Q |
101 |
caccctgacccaccaccaacgcagccctgtcacatcatctcacatggttttggaatgttgcggatgcttccggtcttagccggcttacaatgacattttt |
200 |
Q |
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|||| ||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36248463 |
caccatgacccaccaccaacacaaccctgacacatcatctcacatggttttggaatgttgcggatgcttccggtcttagccggcttacaatgacattttt |
36248364 |
T |
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| Q |
201 |
cagtcatattatttcaagcatatgtacgactttaactaagcattaacatacgagactaatagattccactgtc |
273 |
Q |
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| T |
36248363 |
cagtcatattatttcaagcatatgtacgactttaactaagcattaacatacgagactaatagattccactgtc |
36248291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 270 - 382
Target Start/End: Complemental strand, 36248262 - 36248150
Alignment:
| Q |
270 |
tgtcttcttcacttatctattcatggtaagttgctaaaccaccgtgcgaaaatatcccaagaagaaagagttgttcttttatctgaattgcttggtttag |
369 |
Q |
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| T |
36248262 |
tgtcttcttcacttatctattcatggtaagttgctaaaccaccgtgcgaaaatatcccaagaagaaagagttgttcttttatctaaattgcttggtttag |
36248163 |
T |
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| Q |
370 |
accctgatgatgt |
382 |
Q |
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| T |
36248162 |
accctgatgatgt |
36248150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 53300132 - 53300092
Alignment:
| Q |
1 |
tattttgtgctttgggtgtttgatgaaatgtttcaaataat |
41 |
Q |
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| T |
53300132 |
tattttatgctttaggtgtttgatgaaatgtttcaaataat |
53300092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 302
Target Start/End: Complemental strand, 16963431 - 16963399
Alignment:
| Q |
270 |
tgtcttcttcacttatctattcatggtaagttg |
302 |
Q |
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| T |
16963431 |
tgtcttcttcacttgtctattcatggtaagttg |
16963399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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