View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18320_low_2 (Length: 569)
Name: NF18320_low_2
Description: NF18320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18320_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 1 - 554
Target Start/End: Complemental strand, 5026033 - 5025480
Alignment:
| Q |
1 |
agaaggactaatcaaagaacgttctcgcaatatatttcaaattacttattgctaaaatttctttcctttctcagggggaacaggaaataacatcaaagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5026033 |
agaaggactaatcaaagaacgttctcgcaatatatttcaaattacttattgctaaaatttctttcctttctcagggggaacaggaaataacatcaaagag |
5025934 |
T |
|
| Q |
101 |
ttgaataatgcaatacaaaagacaaaggtaagataattagatcaaagtaactttacctcatttgagaaatttagcagaatcagttaagaatgtgagacta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5025933 |
ttgaataatgcaatacaaaagacaaaggtaagataattagatcaaagtaactttacctcatttgagaaatttagcagaatcagttaagaatgtgagacta |
5025834 |
T |
|
| Q |
201 |
tgattgcaggcaaagaatgtgaaggttccaagagagaatcaacaatcctccacagaatcatcatcaggaacttccatgtcttcgtcgtcttgttcatcta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5025833 |
tgattgcaggcaaagaatgtgaaggttccaagagagaatcaacaatcctccacagaatcatcatcaggaacttccatgtcttcgtcgtcttgttcatcta |
5025734 |
T |
|
| Q |
301 |
gcatgtcatccatcgagtttaacagaacaatacatatagaaccaccatcgataagtccaatgaaaaccacagaaaattccaattcagaagcagcagcgaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5025733 |
gcatgtcatccatcgagtttaacagaacaatacatatagaaccaccatcgataagtccaatgaaaaccacagaaaattccaattcagaagcagcagcgaa |
5025634 |
T |
|
| Q |
401 |
gcaacatgacaaccaaagaaatcaatcacctaatttccatgatattgtcaaagactcgatgcataaagacgcacaaagattatcggtaaaaactctggct |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5025633 |
gcaacatgacaaccaaagaaatcaatcacctaatttccatgatattgtcaaagactcgatgcataaagacgcacaaagattatcggtaaaaactctggct |
5025534 |
T |
|
| Q |
501 |
aaagaggaaaagaagggtcgaatcttgaaacacatcgactctccgcggcctatg |
554 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5025533 |
aaagaggaaaagaagggtcgaatcttgaaacacatcgactctccgcggcctatg |
5025480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 4560323 - 4560214
Alignment:
| Q |
199 |
tatgattgcaggcaaagaatgtgaaggttccaagagagaatcaacaatcctccacagaatcatcatcaggaacttccatgtcttcgtcgtcttgttcatc |
298 |
Q |
| |
|
||||| |||||| ||||||| ||| || ||| |||||| ||||||| |||||||||||| ||||| |||||| | ||||| || ||||||||||| |
|
|
| T |
4560323 |
tatgaatgcaggaaaagaatcaaaagattgcaaaagagaagcaacaattctccacagaatc---atcagtaacttctgtctcttcatcatcttgttcatc |
4560227 |
T |
|
| Q |
299 |
tagcatgtcatcc |
311 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
4560226 |
tagcatgacatcc |
4560214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University