View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18320_low_20 (Length: 384)

Name: NF18320_low_20
Description: NF18320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18320_low_20
NF18320_low_20
[»] chr1 (3 HSPs)
chr1 (140-366)||(1922491-1922710)
chr1 (175-236)||(1948160-1948219)
chr1 (26-64)||(2362353-2362391)
[»] chr8 (6 HSPs)
chr8 (26-68)||(26871039-26871081)
chr8 (26-66)||(7596927-7596967)
chr8 (26-63)||(8835906-8835943)
chr8 (26-63)||(9047095-9047132)
chr8 (26-62)||(13884196-13884232)
chr8 (26-66)||(30170765-30170805)
[»] chr3 (2 HSPs)
chr3 (28-69)||(9719479-9719520)
chr3 (26-62)||(32457791-32457827)
[»] chr2 (7 HSPs)
chr2 (28-64)||(10216861-10216897)
chr2 (26-61)||(19695716-19695751)
chr2 (26-60)||(39285854-39285888)
chr2 (26-63)||(11965791-11965828)
chr2 (26-62)||(25507254-25507290)
chr2 (26-66)||(30856802-30856842)
chr2 (26-62)||(45376257-45376293)
[»] chr6 (3 HSPs)
chr6 (26-61)||(1196058-1196093)
chr6 (26-67)||(11635571-11635612)
chr6 (26-63)||(18065126-18065163)
[»] chr4 (5 HSPs)
chr4 (26-61)||(42915255-42915290)
chr4 (26-66)||(9032775-9032815)
chr4 (26-62)||(12387690-12387726)
chr4 (26-70)||(42490911-42490955)
chr4 (26-62)||(56215604-56215640)
[»] chr5 (4 HSPs)
chr5 (26-64)||(17063862-17063900)
chr5 (26-62)||(8728617-8728653)
chr5 (26-62)||(11306697-11306733)
chr5 (26-62)||(41621964-41622000)
[»] chr7 (5 HSPs)
chr7 (28-65)||(34978292-34978329)
chr7 (26-62)||(28109956-28109992)
chr7 (26-70)||(37352015-37352059)
chr7 (26-70)||(43107601-43107645)
chr7 (26-62)||(49069248-49069284)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 140 - 366
Target Start/End: Original strand, 1922491 - 1922710
Alignment:
Q  140 tttcttccgttaaaaaactgttagtcaagtctgatttaatttccacatcattaaatcattttgattattatttttactaaaatccctaatattctcagcc 239  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  1922491 tttcttccgttaaaaaactgttagtcaagactgatttaatttccacatcattaaatcattttgattatta---ttactaaaatccctaatattctcagcc 1922587  T
Q  240 aaaaataatgaaatacttgattcctttagctnnnnnnnttaataatcaaactgcgttccttccttctatagctgcatctacgtacgtttcagccaaatca 339  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||    
T  1922588 aaaaataatgaaatacttgattcctttagctaaaaaaattaataatcaaactgcgttccttccttctatagctgcatc----tacgtttcagccaaatca 1922683  T
Q  340 attgtgatttagttgttagaggttact 366  Q
    |||||||||||||||||||||||||||    
T  1922684 attgtgatttagttgttagaggttact 1922710  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 1948160 - 1948219
Alignment:
Q  175 ttaatttccacatcattaaatcattttgattattatttttactaaaatccctaatattctca 236  Q
    |||||||||||| |||||||||||||| |||||||  | |||||||||  ||||||||||||    
T  1948160 ttaatttccacaccattaaatcattttaattatta--tatactaaaattgctaatattctca 1948219  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 2362391 - 2362353
Alignment:
Q  26 agttgtcaaaaagtgattgtacaaatatcaattctcatt 64  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  2362391 agttatcaaaaagtgattgtacaaatatcatttctcatt 2362353  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 26871081 - 26871039
Alignment:
Q  26 agttgtcaaaaagtgattgtacaaatatcaattctcatttttt 68  Q
    |||||||| ||||||||||||||||||||| ||||||||||||    
T  26871081 agttgtcataaagtgattgtacaaatatcatttctcatttttt 26871039  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 7596927 - 7596967
Alignment:
Q  26 agttgtcaaaaagtgattgtacaaatatcaattctcatttt 66  Q
    |||||||| ||||||||||||||||||||| ||||||||||    
T  7596927 agttgtcacaaagtgattgtacaaatatcatttctcatttt 7596967  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 8835906 - 8835943
Alignment:
Q  26 agttgtcaaaaagtgattgtacaaatatcaattctcat 63  Q
    ||||||||||||||||| |||||||||||| |||||||    
T  8835906 agttgtcaaaaagtgatcgtacaaatatcatttctcat 8835943  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 9047095 - 9047132
Alignment:
Q  26 agttgtcaaaaagtgattgtacaaatatcaattctcat 63  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  9047095 agttgtcaaaaagtggttgtacaaatatcatttctcat 9047132  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 13884196 - 13884232
Alignment:
Q  26 agttgtcaaaaagtgattgtacaaatatcaattctca 62  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  13884196 agttgtcaaaaaatgattgtacaaatatcatttctca 13884232  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 30170765 - 30170805
Alignment:
Q  26 agttgtcaaaaagtgattgtacaaatatcaattctcatttt 66  Q
    ||||||||||||||| |||||||||||||| ||||| ||||    
T  30170765 agttgtcaaaaagtggttgtacaaatatcatttctcttttt 30170805  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 9719479 - 9719520
Alignment:
Q  28 ttgtcaaaaagtgattgtacaaatatcaattctcatttttta 69  Q
    ||||||||||||| |||||||||||||| |||||||||||||    
T  9719479 ttgtcaaaaagtggttgtacaaatatcatttctcatttttta 9719520  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 32457791 - 32457827
Alignment:
Q  26 agttgtcaaaaagtgattgtacaaatatcaattctca 62  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  32457791 agttgtcaaaaagtggttgtacaaatatcatttctca 32457827  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 10216897 - 10216861
Alignment:
Q  28 ttgtcaaaaagtgattgtacaaatatcaattctcatt 64  Q
    |||||||||||||||||||||||||||| ||||||||    
T  10216897 ttgtcaaaaagtgattgtacaaatatcatttctcatt 10216861  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 19695716 - 19695751
Alignment:
Q  26 agttgtcaaaaagtgattgtacaaatatcaattctc 61  Q
    |||||||||||||||||||||||||||||| |||||    
T  19695716 agttgtcaaaaagtgattgtacaaatatcatttctc 19695751  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 39285888 - 39285854
Alignment:
Q  26 agttgtcaaaaagtgattgtacaaatatcaattct 60  Q
    |||||||||||||||||||||||||||||| ||||    
T  39285888 agttgtcaaaaagtgattgtacaaatatcatttct 39285854  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 11965828 - 11965791
Alignment:
Q  26 agttgtcaaaaagtgattgtacaaatatcaattctcat 63  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  11965828 agttgtcaaaaagtgattgttcaaatatcatttctcat 11965791  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 25507290 - 25507254
Alignment:
Q  26 agttgtcaaaaagtgattgtacaaatatcaattctca 62  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  25507290 agttgtcaaaaagtggttgtacaaatatcatttctca 25507254  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 30856842 - 30856802
Alignment:
Q  26 agttgtcaaaaagtgattgtacaaatatcaattctcatttt 66  Q
    |||||||| |||||| |||||||||||||| ||||||||||    
T  30856842 agttgtcacaaagtggttgtacaaatatcatttctcatttt 30856802  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 45376257 - 45376293
Alignment:
Q  26 agttgtcaaaaagtgattgtacaaatatcaattctca 62  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  45376257 agttgtcaaaaagtggttgtacaaatatcatttctca 45376293  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 1196093 - 1196058
Alignment:
Q  26 agttgtcaaaaagtgattgtacaaatatcaattctc 61  Q
    |||||||||||||||||||||||||||||| |||||    
T  1196093 agttgtcaaaaagtgattgtacaaatatcatttctc 1196058  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 11635571 - 11635612
Alignment:
Q  26 agttgtcaaaaagtgattgtacaaatatcaattctcattttt 67  Q
    |||||||||||| ||||||| ||||||||| |||||||||||    
T  11635571 agttgtcaaaaaatgattgttcaaatatcatttctcattttt 11635612  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 18065126 - 18065163
Alignment:
Q  26 agttgtcaaaaagtgattgtacaaatatcaattctcat 63  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  18065126 agttgtcaaaaagtgattgttcaaatatcatttctcat 18065163  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 42915255 - 42915290
Alignment:
Q  26 agttgtcaaaaagtgattgtacaaatatcaattctc 61  Q
    |||||||||||||||||||||||||||||| |||||    
T  42915255 agttgtcaaaaagtgattgtacaaatatcatttctc 42915290  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 9032815 - 9032775
Alignment:
Q  26 agttgtcaaaaagtgattgtacaaatatcaattctcatttt 66  Q
    |||||||| ||| ||||||||||||||||| ||||||||||    
T  9032815 agttgtcacaaattgattgtacaaatatcatttctcatttt 9032775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 12387690 - 12387726
Alignment:
Q  26 agttgtcaaaaagtgattgtacaaatatcaattctca 62  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  12387690 agttgtcaaaaaatgattgtacaaatatcatttctca 12387726  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 42490955 - 42490911
Alignment:
Q  26 agttgtcaaaaagtgattgtacaaatatcaattctcattttttaa 70  Q
    ||||||||||||||| |||||||||||||| |||||  |||||||    
T  42490955 agttgtcaaaaagtggttgtacaaatatcatttctctgtttttaa 42490911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 56215640 - 56215604
Alignment:
Q  26 agttgtcaaaaagtgattgtacaaatatcaattctca 62  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  56215640 agttgtcaaaaagtggttgtacaaatatcatttctca 56215604  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 17063900 - 17063862
Alignment:
Q  26 agttgtcaaaaagtgattgtacaaatatcaattctcatt 64  Q
    |||||||||||| ||||||||||||||||| ||||||||    
T  17063900 agttgtcaaaaaatgattgtacaaatatcatttctcatt 17063862  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 8728617 - 8728653
Alignment:
Q  26 agttgtcaaaaagtgattgtacaaatatcaattctca 62  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  8728617 agttgtcaaaaagtggttgtacaaatatcatttctca 8728653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 11306733 - 11306697
Alignment:
Q  26 agttgtcaaaaagtgattgtacaaatatcaattctca 62  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  11306733 agttgttaaaaagtgattgtacaaatatcatttctca 11306697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 41621964 - 41622000
Alignment:
Q  26 agttgtcaaaaagtgattgtacaaatatcaattctca 62  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  41621964 agttgtcaaaaagtggttgtacaaatatcatttctca 41622000  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 34978329 - 34978292
Alignment:
Q  28 ttgtcaaaaagtgattgtacaaatatcaattctcattt 65  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  34978329 ttgtcaaaaagtgattgttcaaatatcatttctcattt 34978292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 28109992 - 28109956
Alignment:
Q  26 agttgtcaaaaagtgattgtacaaatatcaattctca 62  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  28109992 agttgtcaaaaagtggttgtacaaatatcatttctca 28109956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 37352015 - 37352059
Alignment:
Q  26 agttgtcaaaaagtgattgtacaaatatcaattctcattttttaa 70  Q
    |||||||| |||||| |||||||||||||| ||||| ||||||||    
T  37352015 agttgtcacaaagtggttgtacaaatatcatttctctttttttaa 37352059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 43107645 - 43107601
Alignment:
Q  26 agttgtcaaaaagtgattgtacaaatatcaattctcattttttaa 70  Q
    ||||||||  |||||||| ||||||||||| ||||||||||||||    
T  43107645 agttgtcatgaagtgattttacaaatatcatttctcattttttaa 43107601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 49069284 - 49069248
Alignment:
Q  26 agttgtcaaaaagtgattgtacaaatatcaattctca 62  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  49069284 agttgtcaaaaagtggttgtacaaatatcatttctca 49069248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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