View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18320_low_22 (Length: 362)
Name: NF18320_low_22
Description: NF18320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18320_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 20 - 354
Target Start/End: Original strand, 6021544 - 6021878
Alignment:
| Q |
20 |
gataggaagacagctaagaattcatatacatcagaatctaaacaagataatgagatgcaatttcctgagaagattgctggaaaaaggcaggtaagaagat |
119 |
Q |
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| T |
6021544 |
gataggaagacagctaagaattcatatacatcagaatctaaacaagataatgagatgcaatttcctgagaagattgctggaaaaaggcaggtaagaagat |
6021643 |
T |
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| Q |
120 |
ctggaaaacaaaggctggatgttgtggatgacccacctgaggatttaacttcagtgcaaaaccaatgcaaagagcttgctggatctgcttcatccagttt |
219 |
Q |
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| T |
6021644 |
ctggaaaacaaaggctggatgttgtggatgacccacctgaggatttaacttcagtgcaaaaccaatgcaaagagcttgctggatctgcttcatccagttt |
6021743 |
T |
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| Q |
220 |
aagactgcaaatggatagtaatagaaacactgtcaatactagaaaaagaaaaagcagtttgtcaagaaaatccacaccttctgttacagaaaggaagagt |
319 |
Q |
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| T |
6021744 |
aagactgcaaatggatagtaatagaaacactgtcaatactagaaaaagaaaaagcagtttgtcaagaaaatccacgccttctgttacagaaaggaagagt |
6021843 |
T |
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| Q |
320 |
actaaaaagtcaaaactttcccctgaattcatctc |
354 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
6021844 |
actaaaaagtcaaaactttcccctgaattcatctc |
6021878 |
T |
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